Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05745 and H281DRAFT_05746 overlap by 4 nucleotides H281DRAFT_05746 and H281DRAFT_05747 are separated by 5 nucleotides
H281DRAFT_05745: H281DRAFT_05745 - MCP methyltransferase, CheR-type, at 18,750 to 19,682
_05745
H281DRAFT_05746: H281DRAFT_05746 - chemotaxis protein CheD, at 19,679 to 20,476
_05746
H281DRAFT_05747: H281DRAFT_05747 - two-component system, chemotaxis family, response regulator CheB, at 20,482 to 21,570
_05747
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 18.908 kb on + strand, within H281DRAFT_05745 at 18.915 kb on + strand, within H281DRAFT_05745 at 18.915 kb on + strand, within H281DRAFT_05745 at 18.916 kb on - strand, within H281DRAFT_05745 at 19.265 kb on + strand, within H281DRAFT_05745 at 19.266 kb on - strand, within H281DRAFT_05745 at 19.269 kb on + strand, within H281DRAFT_05745 at 19.269 kb on + strand, within H281DRAFT_05745 at 19.270 kb on - strand, within H281DRAFT_05745 at 19.270 kb on - strand, within H281DRAFT_05745 at 19.270 kb on - strand, within H281DRAFT_05745 at 19.420 kb on - strand, within H281DRAFT_05745 at 19.420 kb on - strand, within H281DRAFT_05745 at 19.471 kb on - strand, within H281DRAFT_05745 at 19.569 kb on + strand, within H281DRAFT_05745 at 19.570 kb on - strand, within H281DRAFT_05745 at 19.608 kb on + strand at 19.679 kb on - strand at 19.712 kb on + strand at 19.712 kb on + strand at 19.712 kb on + strand at 19.713 kb on - strand at 19.767 kb on - strand, within H281DRAFT_05746 at 19.767 kb on - strand, within H281DRAFT_05746 at 19.801 kb on - strand, within H281DRAFT_05746 at 19.801 kb on - strand, within H281DRAFT_05746 at 20.498 kb on + strand at 20.498 kb on + strand at 20.498 kb on + strand at 20.498 kb on + strand at 20.499 kb on - strand at 20.499 kb on - strand at 20.553 kb on + strand at 21.084 kb on + strand, within H281DRAFT_05747 at 21.084 kb on + strand, within H281DRAFT_05747 at 21.084 kb on + strand, within H281DRAFT_05747 at 21.085 kb on - strand, within H281DRAFT_05747 at 21.085 kb on - strand, within H281DRAFT_05747 at 21.085 kb on - strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.190 kb on + strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.191 kb on - strand, within H281DRAFT_05747 at 21.241 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand, within H281DRAFT_05747 at 21.412 kb on + strand at 21.413 kb on - strand, within H281DRAFT_05747 at 21.413 kb on - strand, within H281DRAFT_05747 at 21.413 kb on - strand, within H281DRAFT_05747
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 18,908 + H281DRAFT_05745 0.17 -0.1 18,915 + H281DRAFT_05745 0.18 -0.0 18,915 + H281DRAFT_05745 0.18 -0.1 18,916 - H281DRAFT_05745 0.18 -0.9 19,265 + H281DRAFT_05745 0.55 -0.9 19,266 - H281DRAFT_05745 0.55 +0.6 19,269 + H281DRAFT_05745 0.56 +0.5 19,269 + H281DRAFT_05745 0.56 +0.4 19,270 - H281DRAFT_05745 0.56 -0.5 19,270 - H281DRAFT_05745 0.56 -0.5 19,270 - H281DRAFT_05745 0.56 -0.2 19,420 - H281DRAFT_05745 0.72 -0.0 19,420 - H281DRAFT_05745 0.72 +0.2 19,471 - H281DRAFT_05745 0.77 +0.7 19,569 + H281DRAFT_05745 0.88 -0.1 19,570 - H281DRAFT_05745 0.88 -0.3 19,608 + +0.3 19,679 - -0.5 19,712 + +0.2 19,712 + -0.6 19,712 + +0.1 19,713 - -0.2 19,767 - H281DRAFT_05746 0.11 -0.5 19,767 - H281DRAFT_05746 0.11 -0.3 19,801 - H281DRAFT_05746 0.15 -0.1 19,801 - H281DRAFT_05746 0.15 +0.3 20,498 + -0.5 20,498 + -1.0 20,498 + -0.6 20,498 + -0.4 20,499 - +0.5 20,499 - +0.4 20,553 + -0.5 21,084 + H281DRAFT_05747 0.55 -0.6 21,084 + H281DRAFT_05747 0.55 -0.2 21,084 + H281DRAFT_05747 0.55 -1.1 21,085 - H281DRAFT_05747 0.55 +0.4 21,085 - H281DRAFT_05747 0.55 +0.2 21,085 - H281DRAFT_05747 0.55 -0.1 21,190 + H281DRAFT_05747 0.65 +0.4 21,190 + H281DRAFT_05747 0.65 -0.0 21,190 + H281DRAFT_05747 0.65 +0.2 21,190 + H281DRAFT_05747 0.65 +0.2 21,190 + H281DRAFT_05747 0.65 -0.4 21,190 + H281DRAFT_05747 0.65 -0.7 21,190 + H281DRAFT_05747 0.65 -0.3 21,190 + H281DRAFT_05747 0.65 +0.2 21,190 + H281DRAFT_05747 0.65 +0.1 21,190 + H281DRAFT_05747 0.65 -0.9 21,191 - H281DRAFT_05747 0.65 +0.3 21,191 - H281DRAFT_05747 0.65 -0.6 21,191 - H281DRAFT_05747 0.65 -0.8 21,191 - H281DRAFT_05747 0.65 -0.6 21,191 - H281DRAFT_05747 0.65 -0.4 21,191 - H281DRAFT_05747 0.65 -1.5 21,191 - H281DRAFT_05747 0.65 +0.0 21,191 - H281DRAFT_05747 0.65 -0.3 21,241 + H281DRAFT_05747 0.70 +0.0 21,412 + H281DRAFT_05747 0.85 -0.0 21,412 + H281DRAFT_05747 0.85 -0.8 21,412 + H281DRAFT_05747 0.85 -0.3 21,412 + -0.4 21,413 - H281DRAFT_05747 0.85 -0.5 21,413 - H281DRAFT_05747 0.85 -0.3 21,413 - H281DRAFT_05747 0.85 -0.2
Or see this region's nucleotide sequence