Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05695

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05693 and H281DRAFT_05694 are separated by 65 nucleotidesH281DRAFT_05694 and H281DRAFT_05695 are separated by 200 nucleotidesH281DRAFT_05695 and H281DRAFT_05696 are separated by 19 nucleotides H281DRAFT_05693: H281DRAFT_05693 - glutamyl-tRNA reductase, at 109,511 to 110,797 _05693 H281DRAFT_05694: H281DRAFT_05694 - two component transcriptional regulator, winged helix family, at 110,863 to 111,573 _05694 H281DRAFT_05695: H281DRAFT_05695 - hypothetical protein, at 111,774 to 112,037 _05695 H281DRAFT_05696: H281DRAFT_05696 - Xaa-Pro aminopeptidase, at 112,057 to 113,871 _05696 Position (kb) 111 112 113Strain fitness (log2 ratio) -1 0 1 2at 110.809 kb on - strandat 110.809 kb on - strandat 110.809 kb on - strandat 110.809 kb on - strandat 110.809 kb on - strandat 110.824 kb on - strandat 110.826 kb on + strandat 110.827 kb on - strandat 110.827 kb on - strandat 110.827 kb on - strandat 110.827 kb on - strandat 110.828 kb on + strandat 110.829 kb on - strandat 110.846 kb on + strandat 110.847 kb on - strandat 110.847 kb on - strandat 110.910 kb on - strandat 110.922 kb on - strandat 110.939 kb on + strand, within H281DRAFT_05694at 111.010 kb on + strand, within H281DRAFT_05694at 111.046 kb on - strand, within H281DRAFT_05694at 111.171 kb on - strand, within H281DRAFT_05694at 111.181 kb on + strand, within H281DRAFT_05694at 111.182 kb on - strand, within H281DRAFT_05694at 111.238 kb on + strand, within H281DRAFT_05694at 111.481 kb on - strand, within H281DRAFT_05694at 111.546 kb on + strandat 111.546 kb on + strandat 111.547 kb on - strandat 111.547 kb on - strandat 111.624 kb on + strandat 111.624 kb on + strandat 111.625 kb on - strandat 111.625 kb on - strandat 111.625 kb on - strandat 111.625 kb on - strandat 111.626 kb on + strandat 111.626 kb on + strandat 111.627 kb on - strandat 111.627 kb on - strandat 111.627 kb on - strandat 111.627 kb on - strandat 111.635 kb on + strandat 111.653 kb on + strandat 111.714 kb on - strandat 111.714 kb on - strandat 111.898 kb on + strand, within H281DRAFT_05695at 111.899 kb on - strand, within H281DRAFT_05695at 111.899 kb on - strand, within H281DRAFT_05695at 112.039 kb on + strandat 112.040 kb on - strandat 112.077 kb on + strandat 112.077 kb on + strandat 112.181 kb on - strandat 112.247 kb on + strand, within H281DRAFT_05696at 112.247 kb on + strand, within H281DRAFT_05696at 112.289 kb on - strand, within H281DRAFT_05696at 112.711 kb on + strand, within H281DRAFT_05696at 112.711 kb on + strand, within H281DRAFT_05696at 112.711 kb on + strand, within H281DRAFT_05696at 112.711 kb on + strand, within H281DRAFT_05696at 112.711 kb on + strand, within H281DRAFT_05696at 112.712 kb on - strand, within H281DRAFT_05696at 112.712 kb on - strand, within H281DRAFT_05696at 112.712 kb on - strand, within H281DRAFT_05696at 112.712 kb on - strand, within H281DRAFT_05696at 112.838 kb on - strand, within H281DRAFT_05696at 112.908 kb on + strand, within H281DRAFT_05696at 112.908 kb on + strand, within H281DRAFT_05696at 112.909 kb on - strand, within H281DRAFT_05696at 112.909 kb on - strand, within H281DRAFT_05696at 112.909 kb on - strand, within H281DRAFT_05696at 112.912 kb on + strand, within H281DRAFT_05696at 112.913 kb on - strand, within H281DRAFT_05696at 112.913 kb on - strand, within H281DRAFT_05696

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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110,809 - +0.7
110,809 - +0.2
110,809 - +0.4
110,809 - -0.1
110,809 - +0.0
110,824 - +0.6
110,826 + +1.7
110,827 - +0.3
110,827 - -0.3
110,827 - +0.2
110,827 - -0.1
110,828 + -0.4
110,829 - +1.1
110,846 + -0.3
110,847 - -0.7
110,847 - -0.0
110,910 - +0.7
110,922 - -0.6
110,939 + H281DRAFT_05694 0.11 -0.2
111,010 + H281DRAFT_05694 0.21 +0.5
111,046 - H281DRAFT_05694 0.26 -1.3
111,171 - H281DRAFT_05694 0.43 -0.4
111,181 + H281DRAFT_05694 0.45 +1.5
111,182 - H281DRAFT_05694 0.45 -0.8
111,238 + H281DRAFT_05694 0.53 +0.5
111,481 - H281DRAFT_05694 0.87 -1.4
111,546 + +0.0
111,546 + +0.7
111,547 - +0.1
111,547 - +0.3
111,624 + -0.6
111,624 + +0.6
111,625 - -1.3
111,625 - +0.4
111,625 - +0.6
111,625 - +0.4
111,626 + -0.5
111,626 + -1.3
111,627 - +0.6
111,627 - +0.3
111,627 - -0.1
111,627 - +0.4
111,635 + +0.3
111,653 + +0.2
111,714 - +0.3
111,714 - -0.1
111,898 + H281DRAFT_05695 0.47 +0.4
111,899 - H281DRAFT_05695 0.47 +1.3
111,899 - H281DRAFT_05695 0.47 -0.3
112,039 + +0.7
112,040 - +0.1
112,077 + +0.6
112,077 + +0.3
112,181 - -0.8
112,247 + H281DRAFT_05696 0.10 +0.6
112,247 + H281DRAFT_05696 0.10 -0.2
112,289 - H281DRAFT_05696 0.13 +1.5
112,711 + H281DRAFT_05696 0.36 +2.4
112,711 + H281DRAFT_05696 0.36 +0.2
112,711 + H281DRAFT_05696 0.36 +0.4
112,711 + H281DRAFT_05696 0.36 +0.0
112,711 + H281DRAFT_05696 0.36 +0.5
112,712 - H281DRAFT_05696 0.36 -0.0
112,712 - H281DRAFT_05696 0.36 +0.2
112,712 - H281DRAFT_05696 0.36 -0.5
112,712 - H281DRAFT_05696 0.36 -0.6
112,838 - H281DRAFT_05696 0.43 +0.3
112,908 + H281DRAFT_05696 0.47 +0.1
112,908 + H281DRAFT_05696 0.47 +0.8
112,909 - H281DRAFT_05696 0.47 -1.1
112,909 - H281DRAFT_05696 0.47 +0.1
112,909 - H281DRAFT_05696 0.47 -0.1
112,912 + H281DRAFT_05696 0.47 +0.2
112,913 - H281DRAFT_05696 0.47 -0.0
112,913 - H281DRAFT_05696 0.47 +0.2

Or see this region's nucleotide sequence