Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05619

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05618 and H281DRAFT_05619 are separated by 187 nucleotidesH281DRAFT_05619 and H281DRAFT_05620 are separated by 294 nucleotides H281DRAFT_05618: H281DRAFT_05618 - outer membrane protein, at 39,332 to 40,057 _05618 H281DRAFT_05619: H281DRAFT_05619 - putative transposase, at 40,245 to 40,952 _05619 H281DRAFT_05620: H281DRAFT_05620 - glutamate synthase (NADH) large subunit, at 41,247 to 45,950 _05620 Position (kb) 40 41Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 39.309 kb on + strandat 39.310 kb on - strandat 39.310 kb on - strandat 39.310 kb on - strandat 39.334 kb on - strandat 39.358 kb on - strandat 39.358 kb on - strandat 39.410 kb on - strand, within H281DRAFT_05618at 39.507 kb on + strand, within H281DRAFT_05618at 39.507 kb on + strand, within H281DRAFT_05618at 39.508 kb on - strand, within H281DRAFT_05618at 39.508 kb on - strand, within H281DRAFT_05618at 39.524 kb on - strand, within H281DRAFT_05618at 39.544 kb on + strand, within H281DRAFT_05618at 39.545 kb on - strand, within H281DRAFT_05618at 39.545 kb on - strand, within H281DRAFT_05618at 39.550 kb on + strand, within H281DRAFT_05618at 39.551 kb on - strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.625 kb on + strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.626 kb on - strand, within H281DRAFT_05618at 39.649 kb on - strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.681 kb on + strand, within H281DRAFT_05618at 39.682 kb on - strand, within H281DRAFT_05618at 39.682 kb on - strand, within H281DRAFT_05618at 39.684 kb on + strand, within H281DRAFT_05618at 39.684 kb on + strand, within H281DRAFT_05618at 39.685 kb on - strand, within H281DRAFT_05618at 39.823 kb on - strand, within H281DRAFT_05618at 40.049 kb on + strandat 40.050 kb on - strandat 40.057 kb on + strandat 40.058 kb on - strandat 40.058 kb on - strandat 40.058 kb on - strandat 40.087 kb on + strandat 40.087 kb on + strandat 40.087 kb on + strandat 40.088 kb on - strandat 40.108 kb on + strandat 40.108 kb on + strandat 40.108 kb on + strandat 40.114 kb on + strandat 40.139 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.213 kb on + strandat 40.214 kb on - strandat 40.217 kb on + strandat 40.218 kb on - strandat 40.218 kb on - strandat 40.236 kb on + strandat 40.237 kb on - strandat 40.237 kb on - strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.342 kb on - strand, within H281DRAFT_05619at 40.361 kb on + strand, within H281DRAFT_05619at 40.361 kb on + strand, within H281DRAFT_05619at 40.390 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.404 kb on + strand, within H281DRAFT_05619at 40.405 kb on - strand, within H281DRAFT_05619at 40.495 kb on - strand, within H281DRAFT_05619at 40.495 kb on - strand, within H281DRAFT_05619at 40.654 kb on - strand, within H281DRAFT_05619at 40.669 kb on - strand, within H281DRAFT_05619at 40.722 kb on + strand, within H281DRAFT_05619at 40.722 kb on + strand, within H281DRAFT_05619at 40.723 kb on - strand, within H281DRAFT_05619at 40.723 kb on - strand, within H281DRAFT_05619at 40.739 kb on + strand, within H281DRAFT_05619at 40.857 kb on + strand, within H281DRAFT_05619at 40.858 kb on - strand, within H281DRAFT_05619at 40.951 kb on - strandat 40.951 kb on - strandat 41.004 kb on + strandat 41.114 kb on + strandat 41.147 kb on - strandat 41.147 kb on - strandat 41.199 kb on + strandat 41.200 kb on - strandat 41.213 kb on - strandat 41.298 kb on + strandat 41.298 kb on + strandat 41.298 kb on + strandat 41.299 kb on - strandat 41.299 kb on - strandat 41.299 kb on - strandat 41.609 kb on + strandat 41.610 kb on - strandat 41.775 kb on + strand, within H281DRAFT_05620at 41.776 kb on - strand, within H281DRAFT_05620at 41.776 kb on - strand, within H281DRAFT_05620at 41.776 kb on - strand, within H281DRAFT_05620at 41.776 kb on - strand, within H281DRAFT_05620at 41.839 kb on - strand, within H281DRAFT_05620at 41.839 kb on - strand, within H281DRAFT_05620at 41.874 kb on + strand, within H281DRAFT_05620at 41.875 kb on - strand, within H281DRAFT_05620at 41.875 kb on - strandat 41.875 kb on - strand, within H281DRAFT_05620at 41.876 kb on + strand, within H281DRAFT_05620at 41.876 kb on + strand, within H281DRAFT_05620at 41.876 kb on + strand, within H281DRAFT_05620at 41.876 kb on + strand, within H281DRAFT_05620at 41.910 kb on + strand, within H281DRAFT_05620

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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39,309 + -0.1
39,310 - +0.0
39,310 - -0.1
39,310 - +1.2
39,334 - -1.2
39,358 - +0.0
39,358 - +0.3
39,410 - H281DRAFT_05618 0.11 -0.5
39,507 + H281DRAFT_05618 0.24 +0.6
39,507 + H281DRAFT_05618 0.24 +0.1
39,508 - H281DRAFT_05618 0.24 -0.1
39,508 - H281DRAFT_05618 0.24 +0.4
39,524 - H281DRAFT_05618 0.26 -0.1
39,544 + H281DRAFT_05618 0.29 +0.1
39,545 - H281DRAFT_05618 0.29 +1.2
39,545 - H281DRAFT_05618 0.29 +0.3
39,550 + H281DRAFT_05618 0.30 +0.1
39,551 - H281DRAFT_05618 0.30 +0.2
39,625 + H281DRAFT_05618 0.40 +0.7
39,625 + H281DRAFT_05618 0.40 -0.3
39,625 + H281DRAFT_05618 0.40 +1.1
39,625 + H281DRAFT_05618 0.40 +0.4
39,626 - H281DRAFT_05618 0.40 -0.6
39,626 - H281DRAFT_05618 0.40 +0.4
39,626 - H281DRAFT_05618 0.40 -0.6
39,626 - H281DRAFT_05618 0.40 +0.5
39,626 - H281DRAFT_05618 0.40 -0.0
39,649 - H281DRAFT_05618 0.44 -0.0
39,681 + H281DRAFT_05618 0.48 +0.3
39,681 + H281DRAFT_05618 0.48 +0.7
39,681 + H281DRAFT_05618 0.48 -0.4
39,681 + H281DRAFT_05618 0.48 +0.4
39,682 - H281DRAFT_05618 0.48 -0.2
39,682 - H281DRAFT_05618 0.48 -0.0
39,684 + H281DRAFT_05618 0.48 +0.2
39,684 + H281DRAFT_05618 0.48 -1.2
39,685 - H281DRAFT_05618 0.49 -0.5
39,823 - H281DRAFT_05618 0.68 -0.1
40,049 + +0.4
40,050 - +1.4
40,057 + +0.1
40,058 - +0.3
40,058 - +0.5
40,058 - -0.5
40,087 + +0.6
40,087 + -0.2
40,087 + +0.1
40,088 - +0.6
40,108 + -0.1
40,108 + +0.0
40,108 + -0.7
40,114 + +0.2
40,139 + -0.1
40,213 + +0.5
40,213 + +0.5
40,213 + +0.4
40,213 + +0.0
40,213 + -1.6
40,214 - +0.2
40,217 + -0.6
40,218 - +0.1
40,218 - -0.2
40,236 + +0.6
40,237 - +0.5
40,237 - -0.2
40,266 + +0.7
40,266 + -1.0
40,266 + +0.4
40,266 + -0.4
40,267 - +0.3
40,267 - +0.2
40,267 - -0.1
40,267 - -0.5
40,267 - -0.2
40,267 - +0.4
40,342 - H281DRAFT_05619 0.14 -0.3
40,361 + H281DRAFT_05619 0.16 -0.1
40,361 + H281DRAFT_05619 0.16 +0.1
40,390 + H281DRAFT_05619 0.20 +0.8
40,404 + H281DRAFT_05619 0.22 +0.0
40,404 + H281DRAFT_05619 0.22 -0.0
40,404 + H281DRAFT_05619 0.22 -0.6
40,404 + H281DRAFT_05619 0.22 -0.3
40,405 - H281DRAFT_05619 0.23 +0.3
40,495 - H281DRAFT_05619 0.35 -0.6
40,495 - H281DRAFT_05619 0.35 -1.3
40,654 - H281DRAFT_05619 0.58 -0.6
40,669 - H281DRAFT_05619 0.60 -0.7
40,722 + H281DRAFT_05619 0.67 +0.3
40,722 + H281DRAFT_05619 0.67 -0.1
40,723 - H281DRAFT_05619 0.68 -2.7
40,723 - H281DRAFT_05619 0.68 -1.8
40,739 + H281DRAFT_05619 0.70 +1.3
40,857 + H281DRAFT_05619 0.86 +0.2
40,858 - H281DRAFT_05619 0.87 -2.0
40,951 - -0.6
40,951 - -0.8
41,004 + -0.8
41,114 + -0.7
41,147 - -5.2
41,147 - -0.9
41,199 + -2.6
41,200 - -2.9
41,213 - -2.9
41,298 + -3.7
41,298 + -0.9
41,298 + -4.8
41,299 - -6.2
41,299 - -3.1
41,299 - -2.9
41,609 + -1.5
41,610 - -4.7
41,775 + H281DRAFT_05620 0.11 -4.3
41,776 - H281DRAFT_05620 0.11 -0.5
41,776 - H281DRAFT_05620 0.11 -3.1
41,776 - H281DRAFT_05620 0.11 -3.9
41,776 - H281DRAFT_05620 0.11 -4.2
41,839 - H281DRAFT_05620 0.13 -5.9
41,839 - H281DRAFT_05620 0.13 -3.8
41,874 + H281DRAFT_05620 0.13 -2.0
41,875 - H281DRAFT_05620 0.13 -2.8
41,875 - +0.6
41,875 - H281DRAFT_05620 0.13 -4.3
41,876 + H281DRAFT_05620 0.13 -2.1
41,876 + H281DRAFT_05620 0.13 -3.6
41,876 + H281DRAFT_05620 0.13 -2.2
41,876 + H281DRAFT_05620 0.13 -4.0
41,910 + H281DRAFT_05620 0.14 -5.8

Or see this region's nucleotide sequence