Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04742 and H281DRAFT_04743 are separated by 67 nucleotides H281DRAFT_04743 and H281DRAFT_04744 are separated by 239 nucleotides
H281DRAFT_04742: H281DRAFT_04742 - fumarylacetoacetate hydrolase, at 150,775 to 152,076
_04742
H281DRAFT_04743: H281DRAFT_04743 - MFS transporter, DHA1 family, arabinose polymer transporter, at 152,144 to 153,310
_04743
H281DRAFT_04744: H281DRAFT_04744 - enoyl-CoA hydratase, at 153,550 to 154,374
_04744
Position (kb) 152
153
154 Strain fitness (log2 ratio) -1
0
1 at 151.204 kb on + strand, within H281DRAFT_04742 at 151.495 kb on - strand, within H281DRAFT_04742 at 151.552 kb on + strand, within H281DRAFT_04742 at 151.553 kb on - strand, within H281DRAFT_04742 at 151.553 kb on - strand, within H281DRAFT_04742 at 151.553 kb on - strand, within H281DRAFT_04742 at 151.553 kb on - strand, within H281DRAFT_04742 at 151.678 kb on + strand, within H281DRAFT_04742 at 151.678 kb on + strand, within H281DRAFT_04742 at 151.679 kb on - strand, within H281DRAFT_04742 at 151.731 kb on - strand, within H281DRAFT_04742 at 151.783 kb on + strand, within H281DRAFT_04742 at 151.784 kb on - strand, within H281DRAFT_04742 at 151.784 kb on - strand, within H281DRAFT_04742 at 151.784 kb on - strand, within H281DRAFT_04742 at 151.789 kb on + strand, within H281DRAFT_04742 at 151.789 kb on + strand, within H281DRAFT_04742 at 151.789 kb on + strand, within H281DRAFT_04742 at 152.727 kb on - strand, within H281DRAFT_04743 at 152.727 kb on - strand, within H281DRAFT_04743 at 153.416 kb on + strand at 153.416 kb on + strand at 153.417 kb on - strand at 153.503 kb on - strand at 153.520 kb on + strand at 153.551 kb on + strand at 153.552 kb on - strand at 153.641 kb on - strand, within H281DRAFT_04744 at 153.697 kb on + strand, within H281DRAFT_04744 at 153.698 kb on - strand, within H281DRAFT_04744
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 151,204 + H281DRAFT_04742 0.33 +0.3 151,495 - H281DRAFT_04742 0.55 -0.0 151,552 + H281DRAFT_04742 0.60 +0.1 151,553 - H281DRAFT_04742 0.60 +0.3 151,553 - H281DRAFT_04742 0.60 +0.1 151,553 - H281DRAFT_04742 0.60 -0.3 151,553 - H281DRAFT_04742 0.60 -0.5 151,678 + H281DRAFT_04742 0.69 +0.7 151,678 + H281DRAFT_04742 0.69 +0.4 151,679 - H281DRAFT_04742 0.69 +0.1 151,731 - H281DRAFT_04742 0.73 +0.0 151,783 + H281DRAFT_04742 0.77 +0.4 151,784 - H281DRAFT_04742 0.77 +0.3 151,784 - H281DRAFT_04742 0.77 -0.4 151,784 - H281DRAFT_04742 0.77 -0.8 151,789 + H281DRAFT_04742 0.78 +0.3 151,789 + H281DRAFT_04742 0.78 +0.3 151,789 + H281DRAFT_04742 0.78 +0.2 152,727 - H281DRAFT_04743 0.50 -0.1 152,727 - H281DRAFT_04743 0.50 +0.4 153,416 + +0.3 153,416 + +1.0 153,417 - -0.2 153,503 - -0.2 153,520 + +0.1 153,551 + +0.0 153,552 - -1.0 153,641 - H281DRAFT_04744 0.11 +1.2 153,697 + H281DRAFT_04744 0.18 +0.5 153,698 - H281DRAFT_04744 0.18 +0.6
Or see this region's nucleotide sequence