Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04172 and H281DRAFT_04173 are separated by 219 nucleotides H281DRAFT_04173 and H281DRAFT_04174 are separated by 177 nucleotides
H281DRAFT_04172: H281DRAFT_04172 - transcriptional regulator, TetR family, at 289,351 to 289,989
_04172
H281DRAFT_04173: H281DRAFT_04173 - Nicotinamidase-related amidase, at 290,209 to 290,835
_04173
H281DRAFT_04174: H281DRAFT_04174 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 291,013 to 292,020
_04174
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1 at 289.227 kb on + strand at 289.227 kb on + strand at 289.342 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.344 kb on + strand at 289.345 kb on - strand at 289.350 kb on + strand at 289.350 kb on + strand at 289.350 kb on + strand at 289.351 kb on - strand at 289.495 kb on + strand, within H281DRAFT_04172 at 289.772 kb on + strand, within H281DRAFT_04172 at 289.772 kb on + strand, within H281DRAFT_04172 at 289.893 kb on - strand, within H281DRAFT_04172 at 290.020 kb on - strand at 290.020 kb on - strand at 290.020 kb on - strand at 290.263 kb on + strand at 290.278 kb on - strand, within H281DRAFT_04173 at 290.347 kb on + strand, within H281DRAFT_04173 at 290.347 kb on + strand, within H281DRAFT_04173 at 290.478 kb on + strand, within H281DRAFT_04173 at 290.489 kb on + strand, within H281DRAFT_04173 at 290.489 kb on + strand, within H281DRAFT_04173 at 290.490 kb on - strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.582 kb on + strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.583 kb on - strand, within H281DRAFT_04173 at 290.782 kb on + strand at 290.786 kb on + strand at 290.786 kb on + strand at 290.787 kb on - strand at 290.998 kb on + strand at 290.998 kb on + strand at 290.999 kb on - strand at 291.018 kb on + strand at 291.019 kb on - strand at 291.019 kb on - strand at 291.291 kb on + strand, within H281DRAFT_04174 at 291.292 kb on - strand, within H281DRAFT_04174 at 291.380 kb on + strand, within H281DRAFT_04174 at 291.508 kb on + strand, within H281DRAFT_04174 at 291.508 kb on + strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.509 kb on - strand, within H281DRAFT_04174 at 291.569 kb on + strand, within H281DRAFT_04174 at 291.569 kb on + strand, within H281DRAFT_04174 at 291.570 kb on - strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.664 kb on + strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174 at 291.665 kb on - strand, within H281DRAFT_04174
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 289,227 + +0.2 289,227 + -0.1 289,342 + +0.8 289,344 + +0.2 289,344 + +1.1 289,344 + -0.3 289,344 + +0.1 289,345 - -2.7 289,350 + -0.4 289,350 + +0.2 289,350 + +0.1 289,351 - +0.5 289,495 + H281DRAFT_04172 0.23 -2.7 289,772 + H281DRAFT_04172 0.66 -2.5 289,772 + H281DRAFT_04172 0.66 -2.3 289,893 - H281DRAFT_04172 0.85 -0.3 290,020 - +0.5 290,020 - -0.2 290,020 - -0.3 290,263 + -0.1 290,278 - H281DRAFT_04173 0.11 -0.4 290,347 + H281DRAFT_04173 0.22 +0.1 290,347 + H281DRAFT_04173 0.22 -0.2 290,478 + H281DRAFT_04173 0.43 +0.4 290,489 + H281DRAFT_04173 0.45 +0.4 290,489 + H281DRAFT_04173 0.45 +0.4 290,490 - H281DRAFT_04173 0.45 +0.0 290,582 + H281DRAFT_04173 0.59 +0.0 290,582 + H281DRAFT_04173 0.59 +0.4 290,582 + H281DRAFT_04173 0.59 -0.1 290,583 - H281DRAFT_04173 0.60 +0.0 290,583 - H281DRAFT_04173 0.60 -0.1 290,583 - H281DRAFT_04173 0.60 -0.9 290,782 + +0.2 290,786 + -1.1 290,786 + -0.1 290,787 - +1.5 290,998 + +0.1 290,998 + -0.2 290,999 - -0.1 291,018 + -0.2 291,019 - +0.3 291,019 - +0.1 291,291 + H281DRAFT_04174 0.28 -0.7 291,292 - H281DRAFT_04174 0.28 +0.0 291,380 + H281DRAFT_04174 0.36 +0.4 291,508 + H281DRAFT_04174 0.49 +0.1 291,508 + H281DRAFT_04174 0.49 +0.0 291,509 - H281DRAFT_04174 0.49 +0.1 291,509 - H281DRAFT_04174 0.49 +0.9 291,509 - H281DRAFT_04174 0.49 -0.3 291,509 - H281DRAFT_04174 0.49 -0.0 291,569 + H281DRAFT_04174 0.55 -0.7 291,569 + H281DRAFT_04174 0.55 -0.8 291,570 - H281DRAFT_04174 0.55 +0.6 291,664 + H281DRAFT_04174 0.65 +0.1 291,664 + H281DRAFT_04174 0.65 -0.5 291,664 + H281DRAFT_04174 0.65 +0.3 291,664 + H281DRAFT_04174 0.65 -0.5 291,664 + H281DRAFT_04174 0.65 +0.5 291,665 - H281DRAFT_04174 0.65 -0.7 291,665 - H281DRAFT_04174 0.65 -0.1 291,665 - H281DRAFT_04174 0.65 +0.6 291,665 - H281DRAFT_04174 0.65 +0.7 291,665 - H281DRAFT_04174 0.65 +0.1 291,665 - H281DRAFT_04174 0.65 +0.3 291,665 - H281DRAFT_04174 0.65 -0.5
Or see this region's nucleotide sequence