Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03843 and H281DRAFT_03844 are separated by 54 nucleotides H281DRAFT_03844 and H281DRAFT_03845 are separated by 28 nucleotides H281DRAFT_03845 and H281DRAFT_03846 are separated by 4 nucleotides
H281DRAFT_03843: H281DRAFT_03843 - Phenylpropionate dioxygenase, large terminal subunit, at 372,002 to 373,318
_03843
H281DRAFT_03844: H281DRAFT_03844 - L-glutamine synthetase (EC 6.3.1.2), at 373,373 to 374,809
_03844
H281DRAFT_03845: H281DRAFT_03845 - ferredoxin, 2Fe-2S, at 374,838 to 375,161
_03845
H281DRAFT_03846: H281DRAFT_03846 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit, at 375,166 to 376,425
_03846
Position (kb) 373
374
375 Strain fitness (log2 ratio) -1
0
1 at 372.402 kb on - strand, within H281DRAFT_03843 at 372.587 kb on + strand at 372.626 kb on - strand, within H281DRAFT_03843 at 372.917 kb on + strand, within H281DRAFT_03843 at 372.932 kb on + strand, within H281DRAFT_03843 at 372.932 kb on + strand at 372.933 kb on - strand, within H281DRAFT_03843 at 373.256 kb on + strand at 373.461 kb on + strand at 373.720 kb on + strand, within H281DRAFT_03844 at 373.746 kb on - strand, within H281DRAFT_03844 at 373.789 kb on - strand, within H281DRAFT_03844 at 373.885 kb on + strand, within H281DRAFT_03844 at 374.319 kb on - strand, within H281DRAFT_03844 at 374.853 kb on + strand at 375.174 kb on + strand at 375.175 kb on - strand at 375.411 kb on - strand, within H281DRAFT_03846 at 375.467 kb on - strand, within H281DRAFT_03846 at 375.726 kb on + strand, within H281DRAFT_03846 at 375.753 kb on + strand, within H281DRAFT_03846 at 375.753 kb on + strand, within H281DRAFT_03846
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 372,402 - H281DRAFT_03843 0.30 -0.1 372,587 + +0.9 372,626 - H281DRAFT_03843 0.47 +0.5 372,917 + H281DRAFT_03843 0.69 -0.4 372,932 + H281DRAFT_03843 0.71 +0.1 372,932 + +1.3 372,933 - H281DRAFT_03843 0.71 +0.2 373,256 + +0.5 373,461 + +0.3 373,720 + H281DRAFT_03844 0.24 +1.4 373,746 - H281DRAFT_03844 0.26 +0.6 373,789 - H281DRAFT_03844 0.29 -0.1 373,885 + H281DRAFT_03844 0.36 +0.8 374,319 - H281DRAFT_03844 0.66 +0.1 374,853 + +0.5 375,174 + -0.4 375,175 - -0.1 375,411 - H281DRAFT_03846 0.19 +0.5 375,467 - H281DRAFT_03846 0.24 -0.5 375,726 + H281DRAFT_03846 0.44 +0.1 375,753 + H281DRAFT_03846 0.47 +0.4 375,753 + H281DRAFT_03846 0.47 -0.4
Or see this region's nucleotide sequence