Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03712 and H281DRAFT_03713 are separated by 73 nucleotides H281DRAFT_03713 and H281DRAFT_03714 are separated by 133 nucleotides H281DRAFT_03714 and H281DRAFT_03715 are separated by 454 nucleotides
H281DRAFT_03712: H281DRAFT_03712 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 227,267 to 228,058
_03712
H281DRAFT_03713: H281DRAFT_03713 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 228,132 to 228,896
_03713
H281DRAFT_03714: H281DRAFT_03714 - transcriptional regulator, LysR family, at 229,030 to 229,974
_03714
H281DRAFT_03715: H281DRAFT_03715 - transcriptional regulator, LysR family, at 230,429 to 231,304
_03715
Position (kb) 229
230 Strain fitness (log2 ratio) -1
0
1
2 at 228.137 kb on + strand at 228.137 kb on + strand at 228.549 kb on + strand, within H281DRAFT_03713 at 228.722 kb on - strand, within H281DRAFT_03713 at 228.846 kb on - strand at 228.846 kb on - strand at 228.952 kb on + strand at 228.954 kb on + strand at 228.955 kb on - strand at 229.444 kb on + strand, within H281DRAFT_03714 at 229.541 kb on - strand, within H281DRAFT_03714 at 229.609 kb on + strand, within H281DRAFT_03714 at 229.609 kb on + strand, within H281DRAFT_03714 at 229.610 kb on - strand, within H281DRAFT_03714 at 229.690 kb on - strand, within H281DRAFT_03714 at 229.775 kb on + strand, within H281DRAFT_03714 at 229.832 kb on + strand, within H281DRAFT_03714 at 229.843 kb on + strand, within H281DRAFT_03714 at 230.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 228,137 + +0.3 228,137 + +0.2 228,549 + H281DRAFT_03713 0.55 -0.3 228,722 - H281DRAFT_03713 0.77 -0.7 228,846 - +0.4 228,846 - -0.2 228,952 + +0.0 228,954 + -0.2 228,955 - -0.0 229,444 + H281DRAFT_03714 0.44 +0.4 229,541 - H281DRAFT_03714 0.54 +1.3 229,609 + H281DRAFT_03714 0.61 +0.1 229,609 + H281DRAFT_03714 0.61 +0.4 229,610 - H281DRAFT_03714 0.61 +0.8 229,690 - H281DRAFT_03714 0.70 -0.2 229,775 + H281DRAFT_03714 0.79 +0.2 229,832 + H281DRAFT_03714 0.85 +1.9 229,843 + H281DRAFT_03714 0.86 +0.2 230,035 + -0.1
Or see this region's nucleotide sequence