Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03676 and H281DRAFT_03677 are separated by 151 nucleotides H281DRAFT_03677 and H281DRAFT_03678 are separated by 29 nucleotides H281DRAFT_03678 and H281DRAFT_03679 are separated by 4 nucleotides
H281DRAFT_03676: H281DRAFT_03676 - Uncharacterized conserved protein, at 192,765 to 193,118
_03676
H281DRAFT_03677: H281DRAFT_03677 - Uncharacterized conserved protein, at 193,270 to 193,683
_03677
H281DRAFT_03678: H281DRAFT_03678 - hypothetical protein, at 193,713 to 194,120
_03678
H281DRAFT_03679: H281DRAFT_03679 - RNA polymerase, sigma subunit, ECF family, at 194,125 to 195,399
_03679
Position (kb) 193
194
195 Strain fitness (log2 ratio) -1
0
1 at 192.720 kb on + strand at 192.771 kb on + strand at 192.771 kb on + strand at 192.771 kb on + strand at 192.772 kb on - strand at 192.772 kb on - strand at 192.773 kb on + strand at 192.773 kb on + strand at 192.773 kb on + strand at 192.773 kb on + strand at 192.774 kb on - strand at 192.774 kb on - strand at 192.774 kb on - strand at 192.774 kb on - strand at 192.774 kb on - strand at 192.774 kb on - strand at 192.774 kb on - strand at 193.090 kb on + strand at 193.117 kb on - strand at 193.121 kb on + strand at 193.612 kb on + strand, within H281DRAFT_03677 at 193.700 kb on + strand at 193.852 kb on - strand, within H281DRAFT_03678 at 193.852 kb on - strand, within H281DRAFT_03678 at 193.937 kb on - strand, within H281DRAFT_03678 at 193.937 kb on - strand, within H281DRAFT_03678 at 194.041 kb on - strand, within H281DRAFT_03678 at 194.073 kb on - strand, within H281DRAFT_03678 at 194.073 kb on - strand, within H281DRAFT_03678 at 194.073 kb on - strand, within H281DRAFT_03678 at 194.195 kb on - strand at 194.408 kb on + strand, within H281DRAFT_03679 at 194.725 kb on + strand, within H281DRAFT_03679
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 192,720 + -0.1 192,771 + -0.5 192,771 + +0.3 192,771 + +1.0 192,772 - +0.4 192,772 - +1.1 192,773 + +0.4 192,773 + -0.8 192,773 + +0.2 192,773 + -1.1 192,774 - +0.5 192,774 - +0.2 192,774 - -0.2 192,774 - -0.3 192,774 - +1.0 192,774 - +0.3 192,774 - +0.5 193,090 + -0.1 193,117 - +0.0 193,121 + -0.5 193,612 + H281DRAFT_03677 0.83 -0.1 193,700 + -0.0 193,852 - H281DRAFT_03678 0.34 +1.1 193,852 - H281DRAFT_03678 0.34 +0.4 193,937 - H281DRAFT_03678 0.55 +0.8 193,937 - H281DRAFT_03678 0.55 -1.0 194,041 - H281DRAFT_03678 0.80 +0.5 194,073 - H281DRAFT_03678 0.88 +0.3 194,073 - H281DRAFT_03678 0.88 +0.7 194,073 - H281DRAFT_03678 0.88 +0.8 194,195 - +0.4 194,408 + H281DRAFT_03679 0.22 +0.4 194,725 + H281DRAFT_03679 0.47 -0.8
Or see this region's nucleotide sequence