Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03322 and H281DRAFT_03323 are separated by 54 nucleotides H281DRAFT_03323 and H281DRAFT_03324 overlap by 4 nucleotides H281DRAFT_03324 and H281DRAFT_03325 are separated by 57 nucleotides H281DRAFT_03325 and H281DRAFT_03326 are separated by 63 nucleotides
H281DRAFT_03322: H281DRAFT_03322 - hypothetical protein, at 383,013 to 383,306
_03322
H281DRAFT_03323: H281DRAFT_03323 - hypothetical protein, at 383,361 to 383,996
_03323
H281DRAFT_03324: H281DRAFT_03324 - Low affinity Fe/Cu permease, at 383,993 to 384,520
_03324
H281DRAFT_03325: H281DRAFT_03325 - putative regulatory protein, FmdB family, at 384,578 to 384,793
_03325
H281DRAFT_03326: H281DRAFT_03326 - PAS domain S-box-containing protein, at 384,857 to 387,025
_03326
Position (kb) 383
384
385 Strain fitness (log2 ratio) -1
0
1 at 383.124 kb on - strand, within H281DRAFT_03322 at 383.213 kb on - strand, within H281DRAFT_03322 at 383.956 kb on + strand at 383.957 kb on - strand at 383.957 kb on - strand at 384.080 kb on + strand, within H281DRAFT_03324 at 384.102 kb on + strand, within H281DRAFT_03324 at 384.778 kb on - strand at 384.778 kb on - strand at 384.784 kb on - strand at 384.784 kb on - strand at 384.810 kb on - strand at 384.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 383,124 - H281DRAFT_03322 0.38 +0.3 383,213 - H281DRAFT_03322 0.68 -0.2 383,956 + +0.1 383,957 - -0.0 383,957 - -0.4 384,080 + H281DRAFT_03324 0.16 +0.8 384,102 + H281DRAFT_03324 0.21 +0.4 384,778 - -0.1 384,778 - +1.0 384,784 - +0.3 384,784 - +0.5 384,810 - +0.5 384,850 - -0.3
Or see this region's nucleotide sequence