Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03241 and H281DRAFT_03242 are separated by 118 nucleotides H281DRAFT_03242 and H281DRAFT_03243 are separated by 81 nucleotides
H281DRAFT_03241: H281DRAFT_03241 - Short-chain dehydrogenase, at 296,487 to 297,485
_03241
H281DRAFT_03242: H281DRAFT_03242 - Predicted dithiol-disulfide isomerase, DsbA family, at 297,604 to 298,245
_03242
H281DRAFT_03243: H281DRAFT_03243 - hypothetical protein, at 298,327 to 300,243
_03243
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1 at 296.734 kb on + strand, within H281DRAFT_03241 at 296.821 kb on - strand, within H281DRAFT_03241 at 296.821 kb on - strand, within H281DRAFT_03241 at 296.886 kb on - strand, within H281DRAFT_03241 at 297.051 kb on - strand, within H281DRAFT_03241 at 297.051 kb on - strand, within H281DRAFT_03241 at 297.145 kb on - strand, within H281DRAFT_03241 at 297.176 kb on - strand, within H281DRAFT_03241 at 297.243 kb on + strand, within H281DRAFT_03241 at 297.243 kb on + strand, within H281DRAFT_03241 at 297.326 kb on - strand, within H281DRAFT_03241 at 297.552 kb on - strand at 297.595 kb on - strand at 297.711 kb on - strand, within H281DRAFT_03242 at 297.784 kb on + strand, within H281DRAFT_03242 at 297.785 kb on - strand, within H281DRAFT_03242 at 297.785 kb on - strand, within H281DRAFT_03242 at 297.785 kb on - strand, within H281DRAFT_03242 at 297.889 kb on + strand, within H281DRAFT_03242 at 297.895 kb on + strand, within H281DRAFT_03242 at 298.402 kb on + strand at 298.403 kb on - strand at 298.451 kb on + strand at 298.452 kb on - strand at 298.498 kb on + strand at 298.642 kb on + strand, within H281DRAFT_03243 at 298.678 kb on + strand, within H281DRAFT_03243 at 298.710 kb on + strand, within H281DRAFT_03243 at 298.736 kb on + strand, within H281DRAFT_03243 at 298.737 kb on - strand, within H281DRAFT_03243 at 298.786 kb on + strand, within H281DRAFT_03243 at 298.802 kb on - strand, within H281DRAFT_03243 at 298.825 kb on - strand, within H281DRAFT_03243 at 298.855 kb on - strand, within H281DRAFT_03243 at 299.218 kb on + strand, within H281DRAFT_03243 at 299.219 kb on - strand, within H281DRAFT_03243 at 299.219 kb on - strand, within H281DRAFT_03243
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 296,734 + H281DRAFT_03241 0.25 +0.8 296,821 - H281DRAFT_03241 0.33 +0.1 296,821 - H281DRAFT_03241 0.33 -0.2 296,886 - H281DRAFT_03241 0.40 +0.2 297,051 - H281DRAFT_03241 0.56 -0.2 297,051 - H281DRAFT_03241 0.56 -0.2 297,145 - H281DRAFT_03241 0.66 +0.2 297,176 - H281DRAFT_03241 0.69 -0.6 297,243 + H281DRAFT_03241 0.76 -1.8 297,243 + H281DRAFT_03241 0.76 -0.6 297,326 - H281DRAFT_03241 0.84 -0.1 297,552 - -0.3 297,595 - +0.7 297,711 - H281DRAFT_03242 0.17 +0.4 297,784 + H281DRAFT_03242 0.28 +0.3 297,785 - H281DRAFT_03242 0.28 +0.9 297,785 - H281DRAFT_03242 0.28 -0.1 297,785 - H281DRAFT_03242 0.28 -0.2 297,889 + H281DRAFT_03242 0.44 +0.7 297,895 + H281DRAFT_03242 0.45 -0.1 298,402 + -0.3 298,403 - -0.5 298,451 + +0.4 298,452 - +0.4 298,498 + +0.3 298,642 + H281DRAFT_03243 0.16 +0.2 298,678 + H281DRAFT_03243 0.18 -0.3 298,710 + H281DRAFT_03243 0.20 -1.5 298,736 + H281DRAFT_03243 0.21 -0.5 298,737 - H281DRAFT_03243 0.21 +1.0 298,786 + H281DRAFT_03243 0.24 -0.0 298,802 - H281DRAFT_03243 0.25 -0.4 298,825 - H281DRAFT_03243 0.26 -0.0 298,855 - H281DRAFT_03243 0.28 +0.1 299,218 + H281DRAFT_03243 0.46 -0.6 299,219 - H281DRAFT_03243 0.47 +0.8 299,219 - H281DRAFT_03243 0.47 +0.2
Or see this region's nucleotide sequence