Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02708 and H281DRAFT_02709 are separated by 50 nucleotides H281DRAFT_02709 and H281DRAFT_02710 are separated by 211 nucleotides H281DRAFT_02710 and H281DRAFT_02711 overlap by 26 nucleotides
H281DRAFT_02708: H281DRAFT_02708 - 5'-methylthioribose kinase, at 291,478 to 292,746
_02708
H281DRAFT_02709: H281DRAFT_02709 - GntR family transcriptional regulator, at 292,797 to 293,645
_02709
H281DRAFT_02710: H281DRAFT_02710 - transcriptional regulator, Crp/Fnr family, at 293,857 to 294,615
_02710
H281DRAFT_02711: H281DRAFT_02711 - Hydantoin racemase, at 294,590 to 295,246
_02711
Position (kb) 292
293
294 Strain fitness (log2 ratio) -1
0
1
2 at 291.926 kb on + strand, within H281DRAFT_02708 at 292.111 kb on - strand, within H281DRAFT_02708 at 292.207 kb on + strand, within H281DRAFT_02708 at 292.323 kb on - strand, within H281DRAFT_02708 at 292.443 kb on - strand, within H281DRAFT_02708 at 292.844 kb on - strand at 292.983 kb on - strand, within H281DRAFT_02709 at 293.087 kb on - strand, within H281DRAFT_02709 at 293.204 kb on + strand, within H281DRAFT_02709 at 293.804 kb on - strand at 293.844 kb on + strand at 293.968 kb on + strand at 293.998 kb on + strand, within H281DRAFT_02710 at 293.999 kb on - strand at 294.121 kb on + strand, within H281DRAFT_02710 at 294.163 kb on + strand, within H281DRAFT_02710 at 294.163 kb on + strand, within H281DRAFT_02710 at 294.163 kb on + strand, within H281DRAFT_02710 at 294.163 kb on + strand, within H281DRAFT_02710 at 294.267 kb on - strand, within H281DRAFT_02710 at 294.314 kb on + strand, within H281DRAFT_02710 at 294.314 kb on + strand, within H281DRAFT_02710 at 294.315 kb on - strand, within H281DRAFT_02710 at 294.315 kb on - strand, within H281DRAFT_02710 at 294.533 kb on - strand, within H281DRAFT_02710
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 291,926 + H281DRAFT_02708 0.35 -0.6 292,111 - H281DRAFT_02708 0.50 +0.1 292,207 + H281DRAFT_02708 0.57 +0.6 292,323 - H281DRAFT_02708 0.67 -0.3 292,443 - H281DRAFT_02708 0.76 -0.1 292,844 - +0.4 292,983 - H281DRAFT_02709 0.22 -0.0 293,087 - H281DRAFT_02709 0.34 +0.9 293,204 + H281DRAFT_02709 0.48 +0.5 293,804 - -0.2 293,844 + +0.2 293,968 + +2.1 293,998 + H281DRAFT_02710 0.19 +1.1 293,999 - -1.0 294,121 + H281DRAFT_02710 0.35 +0.4 294,163 + H281DRAFT_02710 0.40 +0.2 294,163 + H281DRAFT_02710 0.40 +0.3 294,163 + H281DRAFT_02710 0.40 -0.2 294,163 + H281DRAFT_02710 0.40 +0.6 294,267 - H281DRAFT_02710 0.54 +0.2 294,314 + H281DRAFT_02710 0.60 +0.5 294,314 + H281DRAFT_02710 0.60 -0.3 294,315 - H281DRAFT_02710 0.60 +0.3 294,315 - H281DRAFT_02710 0.60 -0.7 294,533 - H281DRAFT_02710 0.89 +0.2
Or see this region's nucleotide sequence