Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02688 and H281DRAFT_02689 are separated by 93 nucleotides H281DRAFT_02689 and H281DRAFT_02690 are separated by 1 nucleotides H281DRAFT_02690 and H281DRAFT_02691 are separated by 15 nucleotides H281DRAFT_02691 and H281DRAFT_02692 are separated by 536 nucleotides
H281DRAFT_02688: H281DRAFT_02688 - 4-carboxymuconolactone decarboxylase, at 271,045 to 271,746
_02688
H281DRAFT_02689: H281DRAFT_02689 - hypothetical protein, at 271,840 to 272,277
_02689
H281DRAFT_02690: H281DRAFT_02690 - hypothetical protein, at 272,279 to 272,713
_02690
H281DRAFT_02691: H281DRAFT_02691 - transcriptional regulator, ArsR family, at 272,729 to 273,046
_02691
H281DRAFT_02692: H281DRAFT_02692 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 273,583 to 274,182
_02692
Position (kb) 272
273
274 Strain fitness (log2 ratio) -1
0
1
2 at 271.849 kb on - strand at 272.690 kb on - strand at 272.872 kb on + strand, within H281DRAFT_02691 at 272.873 kb on - strand, within H281DRAFT_02691 at 272.882 kb on + strand, within H281DRAFT_02691 at 273.154 kb on + strand at 273.319 kb on + strand at 273.320 kb on - strand at 273.788 kb on + strand, within H281DRAFT_02692 at 273.887 kb on - strand, within H281DRAFT_02692 at 273.887 kb on - strand, within H281DRAFT_02692
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 271,849 - +0.1 272,690 - -1.2 272,872 + H281DRAFT_02691 0.45 +0.8 272,873 - H281DRAFT_02691 0.45 +0.3 272,882 + H281DRAFT_02691 0.48 +0.3 273,154 + -0.1 273,319 + +0.4 273,320 - +0.3 273,788 + H281DRAFT_02692 0.34 +0.5 273,887 - H281DRAFT_02692 0.51 +2.1 273,887 - H281DRAFT_02692 0.51 +0.2
Or see this region's nucleotide sequence