Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02674 and H281DRAFT_02675 are separated by 19 nucleotides H281DRAFT_02675 and H281DRAFT_02676 are separated by 4 nucleotides H281DRAFT_02676 and H281DRAFT_02677 are separated by 73 nucleotides H281DRAFT_02677 and H281DRAFT_02678 are separated by 107 nucleotides
H281DRAFT_02674: H281DRAFT_02674 - carbon-monoxide dehydrogenase medium subunit, at 254,087 to 254,968
_02674
H281DRAFT_02675: H281DRAFT_02675 - carbon-monoxide dehydrogenase small subunit, at 254,988 to 255,509
_02675
H281DRAFT_02676: H281DRAFT_02676 - xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC 1.17.1.4), at 255,514 to 257,880
_02676
H281DRAFT_02677: H281DRAFT_02677 - Enoyl-CoA hydratase/carnithine racemase, at 257,954 to 258,682
_02677
H281DRAFT_02678: H281DRAFT_02678 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 258,790 to 260,457
_02678
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -1
0
1 at 254.536 kb on - strand, within H281DRAFT_02674 at 254.561 kb on + strand, within H281DRAFT_02674 at 254.561 kb on + strand, within H281DRAFT_02674 at 254.562 kb on - strand, within H281DRAFT_02674 at 255.556 kb on + strand at 255.557 kb on - strand at 255.899 kb on - strand, within H281DRAFT_02676 at 255.901 kb on - strand, within H281DRAFT_02676 at 255.938 kb on - strand, within H281DRAFT_02676 at 255.938 kb on - strand, within H281DRAFT_02676 at 256.532 kb on - strand, within H281DRAFT_02676 at 256.561 kb on + strand, within H281DRAFT_02676 at 256.600 kb on + strand, within H281DRAFT_02676 at 257.176 kb on + strand, within H281DRAFT_02676 at 257.177 kb on - strand, within H281DRAFT_02676 at 257.416 kb on + strand, within H281DRAFT_02676 at 257.445 kb on - strand, within H281DRAFT_02676 at 257.638 kb on + strand, within H281DRAFT_02676 at 258.268 kb on - strand, within H281DRAFT_02677 at 258.441 kb on - strand, within H281DRAFT_02677 at 258.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 254,536 - H281DRAFT_02674 0.51 +0.0 254,561 + H281DRAFT_02674 0.54 -0.1 254,561 + H281DRAFT_02674 0.54 +0.1 254,562 - H281DRAFT_02674 0.54 +0.5 255,556 + +1.1 255,557 - -0.4 255,899 - H281DRAFT_02676 0.16 -0.2 255,901 - H281DRAFT_02676 0.16 +0.8 255,938 - H281DRAFT_02676 0.18 +0.9 255,938 - H281DRAFT_02676 0.18 +0.8 256,532 - H281DRAFT_02676 0.43 +0.2 256,561 + H281DRAFT_02676 0.44 -0.0 256,600 + H281DRAFT_02676 0.46 +0.9 257,176 + H281DRAFT_02676 0.70 +0.7 257,177 - H281DRAFT_02676 0.70 +1.6 257,416 + H281DRAFT_02676 0.80 +0.2 257,445 - H281DRAFT_02676 0.82 +0.0 257,638 + H281DRAFT_02676 0.90 +1.0 258,268 - H281DRAFT_02677 0.43 +0.1 258,441 - H281DRAFT_02677 0.67 +0.3 258,807 + +0.1
Or see this region's nucleotide sequence