Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02190 and H281DRAFT_02191 are separated by 98 nucleotides H281DRAFT_02191 and H281DRAFT_02192 are separated by 130 nucleotides H281DRAFT_02192 and H281DRAFT_02193 are separated by 308 nucleotides H281DRAFT_02193 and H281DRAFT_02194 are separated by 60 nucleotides
H281DRAFT_02190: H281DRAFT_02190 - Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist, at 332,043 to 333,068
_02190
H281DRAFT_02191: H281DRAFT_02191 - hypothetical protein, at 333,167 to 333,694
_02191
H281DRAFT_02192: H281DRAFT_02192 - MFS transporter, YNFM family, putative membrane transport protein, at 333,825 to 335,030
_02192
H281DRAFT_02193: H281DRAFT_02193 - hypothetical protein, at 335,339 to 335,524
_02193
H281DRAFT_02194: H281DRAFT_02194 - L-glyceraldehyde 3-phosphate reductase, at 335,585 to 336,628
_02194
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 332.860 kb on + strand, within H281DRAFT_02190 at 332.860 kb on + strand, within H281DRAFT_02190 at 332.861 kb on - strand, within H281DRAFT_02190 at 332.905 kb on + strand, within H281DRAFT_02190 at 332.905 kb on + strand, within H281DRAFT_02190 at 332.920 kb on + strand, within H281DRAFT_02190 at 332.920 kb on + strand, within H281DRAFT_02190 at 332.921 kb on - strand, within H281DRAFT_02190 at 332.939 kb on + strand, within H281DRAFT_02190 at 332.939 kb on + strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.951 kb on + strand, within H281DRAFT_02190 at 332.955 kb on + strand, within H281DRAFT_02190 at 332.956 kb on - strand, within H281DRAFT_02190 at 333.276 kb on + strand, within H281DRAFT_02191 at 333.277 kb on - strand, within H281DRAFT_02191 at 333.410 kb on + strand, within H281DRAFT_02191 at 333.410 kb on + strand, within H281DRAFT_02191 at 333.410 kb on + strand, within H281DRAFT_02191 at 333.411 kb on - strand, within H281DRAFT_02191 at 333.412 kb on + strand, within H281DRAFT_02191 at 333.412 kb on + strand, within H281DRAFT_02191 at 333.412 kb on + strand, within H281DRAFT_02191 at 333.412 kb on + strand, within H281DRAFT_02191 at 333.412 kb on + strand, within H281DRAFT_02191 at 333.438 kb on + strand, within H281DRAFT_02191 at 333.438 kb on + strand, within H281DRAFT_02191 at 333.439 kb on - strand, within H281DRAFT_02191 at 333.459 kb on - strand, within H281DRAFT_02191 at 333.494 kb on + strand, within H281DRAFT_02191 at 333.495 kb on - strand, within H281DRAFT_02191 at 333.495 kb on - strand, within H281DRAFT_02191 at 333.495 kb on - strand, within H281DRAFT_02191 at 333.618 kb on + strand, within H281DRAFT_02191 at 333.618 kb on + strand, within H281DRAFT_02191 at 333.619 kb on - strand, within H281DRAFT_02191 at 333.619 kb on - strand, within H281DRAFT_02191 at 333.638 kb on + strand, within H281DRAFT_02191 at 333.709 kb on + strand at 333.710 kb on - strand at 333.710 kb on - strand at 333.767 kb on + strand at 333.768 kb on - strand at 333.768 kb on - strand at 333.849 kb on + strand at 333.850 kb on - strand at 333.930 kb on + strand at 333.931 kb on - strand at 334.215 kb on + strand, within H281DRAFT_02192 at 334.215 kb on + strand, within H281DRAFT_02192 at 334.215 kb on + strand, within H281DRAFT_02192 at 334.216 kb on - strand, within H281DRAFT_02192 at 334.267 kb on - strand, within H281DRAFT_02192 at 334.267 kb on - strand at 334.267 kb on - strand, within H281DRAFT_02192 at 334.286 kb on - strand, within H281DRAFT_02192 at 334.548 kb on + strand, within H281DRAFT_02192 at 334.548 kb on + strand, within H281DRAFT_02192 at 334.548 kb on + strand, within H281DRAFT_02192 at 334.554 kb on + strand, within H281DRAFT_02192 at 334.554 kb on + strand, within H281DRAFT_02192 at 334.554 kb on + strand, within H281DRAFT_02192 at 334.554 kb on + strand, within H281DRAFT_02192 at 334.555 kb on - strand, within H281DRAFT_02192 at 334.555 kb on - strand, within H281DRAFT_02192 at 334.555 kb on - strand, within H281DRAFT_02192 at 334.555 kb on - strand, within H281DRAFT_02192 at 334.555 kb on - strand, within H281DRAFT_02192 at 334.555 kb on - strand, within H281DRAFT_02192 at 334.626 kb on + strand, within H281DRAFT_02192 at 334.626 kb on + strand, within H281DRAFT_02192 at 334.626 kb on + strand, within H281DRAFT_02192 at 334.627 kb on - strand, within H281DRAFT_02192 at 334.627 kb on - strand, within H281DRAFT_02192 at 334.627 kb on - strand, within H281DRAFT_02192 at 334.872 kb on + strand, within H281DRAFT_02192 at 334.873 kb on - strand, within H281DRAFT_02192 at 334.884 kb on + strand, within H281DRAFT_02192 at 334.884 kb on + strand, within H281DRAFT_02192 at 334.884 kb on + strand at 334.884 kb on + strand, within H281DRAFT_02192 at 334.885 kb on - strand, within H281DRAFT_02192 at 334.885 kb on - strand, within H281DRAFT_02192 at 334.887 kb on + strand, within H281DRAFT_02192 at 334.887 kb on + strand, within H281DRAFT_02192 at 334.887 kb on + strand, within H281DRAFT_02192 at 334.887 kb on + strand, within H281DRAFT_02192 at 334.887 kb on + strand, within H281DRAFT_02192 at 334.915 kb on - strand at 335.227 kb on - strand at 335.240 kb on - strand at 335.260 kb on + strand at 335.260 kb on + strand at 335.260 kb on + strand at 335.260 kb on + strand at 335.260 kb on + strand at 335.260 kb on + strand at 335.261 kb on - strand at 335.261 kb on - strand at 335.261 kb on - strand at 335.261 kb on - strand at 335.261 kb on - strand at 335.263 kb on - strand at 335.263 kb on - strand at 335.338 kb on + strand at 335.338 kb on + strand at 335.338 kb on + strand at 335.338 kb on + strand at 335.339 kb on - strand at 335.409 kb on + strand, within H281DRAFT_02193 at 335.479 kb on - strand, within H281DRAFT_02193 at 335.520 kb on + strand at 335.520 kb on + strand at 335.834 kb on + strand, within H281DRAFT_02194 at 335.834 kb on + strand, within H281DRAFT_02194 at 335.834 kb on + strand, within H281DRAFT_02194 at 335.835 kb on - strand, within H281DRAFT_02194 at 335.835 kb on - strand, within H281DRAFT_02194 at 335.835 kb on - strand, within H281DRAFT_02194 at 335.835 kb on - strand, within H281DRAFT_02194 at 335.928 kb on + strand, within H281DRAFT_02194 at 335.928 kb on + strand, within H281DRAFT_02194 at 335.928 kb on + strand, within H281DRAFT_02194 at 335.929 kb on - strand, within H281DRAFT_02194 at 335.929 kb on - strand, within H281DRAFT_02194
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 332,860 + H281DRAFT_02190 0.80 -0.2 332,860 + H281DRAFT_02190 0.80 +0.4 332,861 - H281DRAFT_02190 0.80 -0.5 332,905 + H281DRAFT_02190 0.84 +0.2 332,905 + H281DRAFT_02190 0.84 -0.1 332,920 + H281DRAFT_02190 0.85 -1.2 332,920 + H281DRAFT_02190 0.85 +0.2 332,921 - H281DRAFT_02190 0.86 -0.2 332,939 + H281DRAFT_02190 0.87 +0.4 332,939 + H281DRAFT_02190 0.87 -0.0 332,940 - H281DRAFT_02190 0.87 -0.3 332,940 - H281DRAFT_02190 0.87 +1.5 332,940 - H281DRAFT_02190 0.87 -0.1 332,940 - H281DRAFT_02190 0.87 -0.2 332,951 + H281DRAFT_02190 0.88 -1.3 332,955 + H281DRAFT_02190 0.89 +1.3 332,956 - H281DRAFT_02190 0.89 +0.1 333,276 + H281DRAFT_02191 0.21 -0.4 333,277 - H281DRAFT_02191 0.21 -0.4 333,410 + H281DRAFT_02191 0.46 -0.8 333,410 + H281DRAFT_02191 0.46 -0.2 333,410 + H281DRAFT_02191 0.46 -0.3 333,411 - H281DRAFT_02191 0.46 -0.3 333,412 + H281DRAFT_02191 0.46 -0.2 333,412 + H281DRAFT_02191 0.46 -0.2 333,412 + H281DRAFT_02191 0.46 +0.7 333,412 + H281DRAFT_02191 0.46 +0.5 333,412 + H281DRAFT_02191 0.46 -0.3 333,438 + H281DRAFT_02191 0.51 +0.3 333,438 + H281DRAFT_02191 0.51 +0.0 333,439 - H281DRAFT_02191 0.52 -2.0 333,459 - H281DRAFT_02191 0.55 -1.1 333,494 + H281DRAFT_02191 0.62 -0.3 333,495 - H281DRAFT_02191 0.62 +0.2 333,495 - H281DRAFT_02191 0.62 -0.3 333,495 - H281DRAFT_02191 0.62 +0.7 333,618 + H281DRAFT_02191 0.85 +0.2 333,618 + H281DRAFT_02191 0.85 +0.8 333,619 - H281DRAFT_02191 0.86 -0.4 333,619 - H281DRAFT_02191 0.86 -0.2 333,638 + H281DRAFT_02191 0.89 -0.7 333,709 + -0.0 333,710 - +0.3 333,710 - -0.2 333,767 + +0.2 333,768 - -0.0 333,768 - +0.6 333,849 + +0.4 333,850 - +0.3 333,930 + -0.2 333,931 - +0.3 334,215 + H281DRAFT_02192 0.32 +0.8 334,215 + H281DRAFT_02192 0.32 -0.9 334,215 + H281DRAFT_02192 0.32 -0.3 334,216 - H281DRAFT_02192 0.32 -0.2 334,267 - H281DRAFT_02192 0.37 +0.1 334,267 - +0.5 334,267 - H281DRAFT_02192 0.37 -0.1 334,286 - H281DRAFT_02192 0.38 +0.4 334,548 + H281DRAFT_02192 0.60 -0.6 334,548 + H281DRAFT_02192 0.60 +0.0 334,548 + H281DRAFT_02192 0.60 -0.3 334,554 + H281DRAFT_02192 0.60 -0.8 334,554 + H281DRAFT_02192 0.60 +0.2 334,554 + H281DRAFT_02192 0.60 -0.0 334,554 + H281DRAFT_02192 0.60 -0.5 334,555 - H281DRAFT_02192 0.61 -1.5 334,555 - H281DRAFT_02192 0.61 +0.4 334,555 - H281DRAFT_02192 0.61 +0.4 334,555 - H281DRAFT_02192 0.61 +0.3 334,555 - H281DRAFT_02192 0.61 -0.1 334,555 - H281DRAFT_02192 0.61 -1.0 334,626 + H281DRAFT_02192 0.66 +0.4 334,626 + H281DRAFT_02192 0.66 -0.1 334,626 + H281DRAFT_02192 0.66 -0.6 334,627 - H281DRAFT_02192 0.67 +0.5 334,627 - H281DRAFT_02192 0.67 +0.8 334,627 - H281DRAFT_02192 0.67 +0.1 334,872 + H281DRAFT_02192 0.87 +0.1 334,873 - H281DRAFT_02192 0.87 +0.3 334,884 + H281DRAFT_02192 0.88 +1.3 334,884 + H281DRAFT_02192 0.88 -1.6 334,884 + -0.8 334,884 + H281DRAFT_02192 0.88 +1.0 334,885 - H281DRAFT_02192 0.88 +0.1 334,885 - H281DRAFT_02192 0.88 +0.5 334,887 + H281DRAFT_02192 0.88 +1.0 334,887 + H281DRAFT_02192 0.88 -2.6 334,887 + H281DRAFT_02192 0.88 -0.4 334,887 + H281DRAFT_02192 0.88 -0.1 334,887 + H281DRAFT_02192 0.88 +0.7 334,915 - +0.2 335,227 - -0.3 335,240 - +1.0 335,260 + +0.2 335,260 + -0.2 335,260 + -0.3 335,260 + +0.3 335,260 + +0.1 335,260 + +0.2 335,261 - -0.6 335,261 - +0.6 335,261 - +0.2 335,261 - -0.4 335,261 - +1.2 335,263 - +0.8 335,263 - +1.0 335,338 + -0.3 335,338 + -0.3 335,338 + +0.2 335,338 + -0.2 335,339 - -0.4 335,409 + H281DRAFT_02193 0.38 -1.7 335,479 - H281DRAFT_02193 0.75 -0.8 335,520 + -0.0 335,520 + -1.9 335,834 + H281DRAFT_02194 0.24 +0.5 335,834 + H281DRAFT_02194 0.24 +0.5 335,834 + H281DRAFT_02194 0.24 +0.4 335,835 - H281DRAFT_02194 0.24 +0.3 335,835 - H281DRAFT_02194 0.24 +0.1 335,835 - H281DRAFT_02194 0.24 +0.6 335,835 - H281DRAFT_02194 0.24 -0.8 335,928 + H281DRAFT_02194 0.33 -0.6 335,928 + H281DRAFT_02194 0.33 +1.0 335,928 + H281DRAFT_02194 0.33 -0.3 335,929 - H281DRAFT_02194 0.33 -0.1 335,929 - H281DRAFT_02194 0.33 +0.2
Or see this region's nucleotide sequence