Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02013

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02012 and H281DRAFT_02013 are separated by 45 nucleotidesH281DRAFT_02013 and H281DRAFT_02014 are separated by 466 nucleotidesH281DRAFT_02014 and H281DRAFT_02015 are separated by 126 nucleotides H281DRAFT_02012: H281DRAFT_02012 - ammonium transporter, at 129,755 to 131,248 _02012 H281DRAFT_02013: H281DRAFT_02013 - nitrogen regulatory protein P-II family, at 131,294 to 131,632 _02013 H281DRAFT_02014: H281DRAFT_02014 - hypothetical protein, at 132,099 to 132,353 _02014 H281DRAFT_02015: H281DRAFT_02015 - Mg chelatase-related protein, at 132,480 to 133,631 _02015 Position (kb) 131 132Strain fitness (log2 ratio) -1 0 1 2at 130.530 kb on + strand, within H281DRAFT_02012at 130.582 kb on + strand, within H281DRAFT_02012at 130.582 kb on + strand, within H281DRAFT_02012at 130.582 kb on + strand, within H281DRAFT_02012at 130.583 kb on - strand, within H281DRAFT_02012at 130.583 kb on - strand, within H281DRAFT_02012at 130.583 kb on - strand, within H281DRAFT_02012at 130.641 kb on + strand, within H281DRAFT_02012at 130.642 kb on - strand, within H281DRAFT_02012at 130.650 kb on + strand, within H281DRAFT_02012at 130.650 kb on + strand, within H281DRAFT_02012at 130.651 kb on - strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.719 kb on + strand, within H281DRAFT_02012at 130.720 kb on - strand, within H281DRAFT_02012at 130.720 kb on - strand, within H281DRAFT_02012at 130.720 kb on - strand, within H281DRAFT_02012at 130.720 kb on - strand, within H281DRAFT_02012at 130.791 kb on + strand, within H281DRAFT_02012at 130.792 kb on - strand, within H281DRAFT_02012at 130.792 kb on - strand, within H281DRAFT_02012at 130.859 kb on + strand, within H281DRAFT_02012at 130.859 kb on + strand, within H281DRAFT_02012at 130.859 kb on + strand, within H281DRAFT_02012at 130.860 kb on - strand, within H281DRAFT_02012at 130.888 kb on - strand, within H281DRAFT_02012at 131.141 kb on - strandat 131.237 kb on + strandat 131.237 kb on + strandat 131.237 kb on + strandat 131.238 kb on - strandat 131.238 kb on - strandat 131.270 kb on + strandat 131.271 kb on - strandat 131.271 kb on - strandat 131.271 kb on - strandat 131.282 kb on + strandat 131.295 kb on + strandat 131.295 kb on + strandat 131.296 kb on - strandat 131.296 kb on - strandat 131.296 kb on - strandat 131.481 kb on + strand, within H281DRAFT_02013at 131.481 kb on + strand, within H281DRAFT_02013at 131.481 kb on + strand, within H281DRAFT_02013at 131.496 kb on + strand, within H281DRAFT_02013at 131.506 kb on + strand, within H281DRAFT_02013at 131.506 kb on + strand, within H281DRAFT_02013at 131.506 kb on + strand, within H281DRAFT_02013at 131.646 kb on + strandat 131.646 kb on + strandat 131.646 kb on + strandat 131.646 kb on + strandat 131.647 kb on - strandat 131.647 kb on - strandat 131.647 kb on - strandat 131.647 kb on - strandat 131.647 kb on - strandat 131.647 kb on - strandat 131.679 kb on + strandat 131.692 kb on + strandat 131.732 kb on - strandat 131.756 kb on + strandat 131.757 kb on - strandat 131.819 kb on - strandat 131.901 kb on + strandat 131.943 kb on + strandat 131.943 kb on + strandat 131.943 kb on + strandat 131.943 kb on + strandat 131.943 kb on + strandat 131.944 kb on - strandat 131.944 kb on - strandat 131.944 kb on - strandat 132.057 kb on + strandat 132.057 kb on + strandat 132.058 kb on - strandat 132.377 kb on + strandat 132.377 kb on + strandat 132.377 kb on + strandat 132.377 kb on + strandat 132.377 kb on + strandat 132.378 kb on - strandat 132.387 kb on + strandat 132.387 kb on + strandat 132.387 kb on + strandat 132.388 kb on - strandat 132.429 kb on + strandat 132.430 kb on - strandat 132.430 kb on - strandat 132.432 kb on + strandat 132.433 kb on - strandat 132.433 kb on - strandat 132.433 kb on - strandat 132.451 kb on + strandat 132.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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130,530 + H281DRAFT_02012 0.52 +0.4
130,582 + H281DRAFT_02012 0.55 +0.8
130,582 + H281DRAFT_02012 0.55 -0.7
130,582 + H281DRAFT_02012 0.55 +0.1
130,583 - H281DRAFT_02012 0.55 +0.1
130,583 - H281DRAFT_02012 0.55 +0.5
130,583 - H281DRAFT_02012 0.55 +0.8
130,641 + H281DRAFT_02012 0.59 -0.2
130,642 - H281DRAFT_02012 0.59 -0.2
130,650 + H281DRAFT_02012 0.60 +0.9
130,650 + H281DRAFT_02012 0.60 -0.4
130,651 - H281DRAFT_02012 0.60 -1.1
130,719 + H281DRAFT_02012 0.65 -0.0
130,719 + H281DRAFT_02012 0.65 +0.8
130,719 + H281DRAFT_02012 0.65 -0.2
130,719 + H281DRAFT_02012 0.65 +0.5
130,719 + H281DRAFT_02012 0.65 +0.1
130,719 + H281DRAFT_02012 0.65 -0.4
130,719 + H281DRAFT_02012 0.65 +0.1
130,720 - H281DRAFT_02012 0.65 -1.3
130,720 - H281DRAFT_02012 0.65 -0.0
130,720 - H281DRAFT_02012 0.65 -1.1
130,720 - H281DRAFT_02012 0.65 -0.1
130,791 + H281DRAFT_02012 0.69 -0.7
130,792 - H281DRAFT_02012 0.69 +0.1
130,792 - H281DRAFT_02012 0.69 -0.9
130,859 + H281DRAFT_02012 0.74 -0.2
130,859 + H281DRAFT_02012 0.74 -0.0
130,859 + H281DRAFT_02012 0.74 +0.5
130,860 - H281DRAFT_02012 0.74 -0.8
130,888 - H281DRAFT_02012 0.76 +0.4
131,141 - +0.0
131,237 + -1.5
131,237 + -0.3
131,237 + +0.4
131,238 - +1.3
131,238 - +0.1
131,270 + -0.1
131,271 - +0.1
131,271 - -0.3
131,271 - +0.6
131,282 + -0.1
131,295 + -0.1
131,295 + +0.6
131,296 - -0.1
131,296 - -1.2
131,296 - +0.4
131,481 + H281DRAFT_02013 0.55 +0.4
131,481 + H281DRAFT_02013 0.55 +0.2
131,481 + H281DRAFT_02013 0.55 +0.1
131,496 + H281DRAFT_02013 0.60 -0.1
131,506 + H281DRAFT_02013 0.63 +2.4
131,506 + H281DRAFT_02013 0.63 +1.2
131,506 + H281DRAFT_02013 0.63 +0.0
131,646 + +0.0
131,646 + +0.4
131,646 + -0.1
131,646 + +0.2
131,647 - +0.1
131,647 - +0.1
131,647 - +0.0
131,647 - +0.6
131,647 - +0.3
131,647 - -0.2
131,679 + +0.9
131,692 + +0.4
131,732 - -0.0
131,756 + +0.5
131,757 - -0.1
131,819 - +0.4
131,901 + -0.1
131,943 + +0.0
131,943 + +0.8
131,943 + +0.2
131,943 + +0.3
131,943 + -0.1
131,944 - +0.0
131,944 - +0.2
131,944 - +1.0
132,057 + -0.4
132,057 + +0.6
132,058 - +0.2
132,377 + -0.2
132,377 + +0.3
132,377 + -0.1
132,377 + -1.2
132,377 + +0.2
132,378 - -0.1
132,387 + -0.1
132,387 + +0.2
132,387 + +0.5
132,388 - +0.1
132,429 + +0.2
132,430 - -0.3
132,430 - -1.3
132,432 + +1.1
132,433 - +0.2
132,433 - -0.0
132,433 - +0.3
132,451 + +0.0
132,535 + +1.0

Or see this region's nucleotide sequence