Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01942 and H281DRAFT_01943 are separated by 66 nucleotides H281DRAFT_01943 and H281DRAFT_01944 are separated by 663 nucleotides
H281DRAFT_01942: H281DRAFT_01942 - histidinol-phosphate aminotransferase, at 58,090 to 59,169
_01942
H281DRAFT_01943: H281DRAFT_01943 - Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I), at 59,236 to 59,493
_01943
H281DRAFT_01944: H281DRAFT_01944 - Rad3-related DNA helicase, at 60,157 to 62,745
_01944
Position (kb) 59
60 Strain fitness (log2 ratio) -1
0
1
2 at 58.401 kb on + strand, within H281DRAFT_01942 at 58.401 kb on + strand, within H281DRAFT_01942 at 58.401 kb on + strand, within H281DRAFT_01942 at 58.401 kb on + strand, within H281DRAFT_01942 at 58.402 kb on - strand, within H281DRAFT_01942 at 58.402 kb on - strand, within H281DRAFT_01942 at 58.402 kb on - strand, within H281DRAFT_01942 at 58.402 kb on - strand, within H281DRAFT_01942 at 58.402 kb on - strand, within H281DRAFT_01942 at 58.429 kb on + strand, within H281DRAFT_01942 at 58.429 kb on + strand, within H281DRAFT_01942 at 58.429 kb on + strand, within H281DRAFT_01942 at 58.430 kb on - strand, within H281DRAFT_01942 at 58.430 kb on - strand, within H281DRAFT_01942 at 58.438 kb on + strand, within H281DRAFT_01942 at 58.447 kb on + strand, within H281DRAFT_01942 at 58.447 kb on + strand, within H281DRAFT_01942 at 58.447 kb on + strand, within H281DRAFT_01942 at 58.519 kb on + strand, within H281DRAFT_01942 at 58.520 kb on - strand at 58.608 kb on - strand, within H281DRAFT_01942 at 58.648 kb on + strand, within H281DRAFT_01942 at 58.648 kb on + strand, within H281DRAFT_01942 at 58.648 kb on + strand, within H281DRAFT_01942 at 58.649 kb on - strand, within H281DRAFT_01942 at 58.802 kb on + strand, within H281DRAFT_01942 at 58.803 kb on - strand, within H281DRAFT_01942 at 58.803 kb on - strand, within H281DRAFT_01942 at 58.865 kb on - strand, within H281DRAFT_01942 at 58.904 kb on + strand, within H281DRAFT_01942 at 58.904 kb on + strand, within H281DRAFT_01942 at 58.904 kb on + strand, within H281DRAFT_01942 at 58.905 kb on - strand, within H281DRAFT_01942 at 58.938 kb on - strand, within H281DRAFT_01942 at 58.946 kb on + strand, within H281DRAFT_01942 at 58.946 kb on + strand, within H281DRAFT_01942 at 58.974 kb on + strand, within H281DRAFT_01942 at 59.002 kb on + strand, within H281DRAFT_01942 at 59.002 kb on + strand, within H281DRAFT_01942 at 59.003 kb on - strand, within H281DRAFT_01942 at 59.003 kb on - strand, within H281DRAFT_01942 at 59.022 kb on - strand, within H281DRAFT_01942 at 59.158 kb on + strand at 59.158 kb on + strand at 59.158 kb on + strand at 59.159 kb on - strand at 59.159 kb on - strand at 59.159 kb on - strand at 59.159 kb on - strand at 59.267 kb on + strand, within H281DRAFT_01943 at 59.268 kb on - strand, within H281DRAFT_01943 at 59.524 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.526 kb on - strand at 59.671 kb on + strand at 59.671 kb on + strand at 59.671 kb on + strand at 59.672 kb on - strand at 59.672 kb on - strand at 59.687 kb on + strand at 59.687 kb on + strand at 59.687 kb on + strand at 59.687 kb on + strand at 59.688 kb on - strand at 59.688 kb on - strand at 59.688 kb on - strand at 59.737 kb on + strand at 59.737 kb on + strand at 59.737 kb on + strand at 59.775 kb on - strand at 59.969 kb on + strand at 59.969 kb on + strand at 59.993 kb on + strand at 59.993 kb on + strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 59.994 kb on - strand at 60.014 kb on - strand at 60.052 kb on + strand at 60.052 kb on + strand at 60.052 kb on + strand at 60.053 kb on - strand at 60.053 kb on - strand at 60.117 kb on - strand at 60.117 kb on - strand at 60.136 kb on + strand at 60.137 kb on - strand at 60.401 kb on + strand at 60.401 kb on + strand at 60.401 kb on + strand at 60.401 kb on + strand at 60.402 kb on - strand at 60.402 kb on - strand at 60.403 kb on + strand at 60.403 kb on + strand at 60.404 kb on - strand at 60.404 kb on - strand at 60.461 kb on - strand, within H281DRAFT_01944 at 60.461 kb on - strand, within H281DRAFT_01944
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 58,401 + H281DRAFT_01942 0.29 -0.4 58,401 + H281DRAFT_01942 0.29 +0.2 58,401 + H281DRAFT_01942 0.29 +0.2 58,401 + H281DRAFT_01942 0.29 -0.6 58,402 - H281DRAFT_01942 0.29 +0.3 58,402 - H281DRAFT_01942 0.29 -0.5 58,402 - H281DRAFT_01942 0.29 +0.5 58,402 - H281DRAFT_01942 0.29 -0.1 58,402 - H281DRAFT_01942 0.29 -0.5 58,429 + H281DRAFT_01942 0.31 +1.0 58,429 + H281DRAFT_01942 0.31 +0.5 58,429 + H281DRAFT_01942 0.31 +0.0 58,430 - H281DRAFT_01942 0.31 +0.9 58,430 - H281DRAFT_01942 0.31 -0.5 58,438 + H281DRAFT_01942 0.32 -0.2 58,447 + H281DRAFT_01942 0.33 +0.1 58,447 + H281DRAFT_01942 0.33 -0.1 58,447 + H281DRAFT_01942 0.33 +2.0 58,519 + H281DRAFT_01942 0.40 +0.0 58,520 - +1.4 58,608 - H281DRAFT_01942 0.48 -0.1 58,648 + H281DRAFT_01942 0.52 -0.7 58,648 + H281DRAFT_01942 0.52 -0.3 58,648 + H281DRAFT_01942 0.52 -0.4 58,649 - H281DRAFT_01942 0.52 +0.3 58,802 + H281DRAFT_01942 0.66 +0.4 58,803 - H281DRAFT_01942 0.66 -0.0 58,803 - H281DRAFT_01942 0.66 +0.6 58,865 - H281DRAFT_01942 0.72 -0.1 58,904 + H281DRAFT_01942 0.75 -0.4 58,904 + H281DRAFT_01942 0.75 +0.8 58,904 + H281DRAFT_01942 0.75 +0.5 58,905 - H281DRAFT_01942 0.75 +0.2 58,938 - H281DRAFT_01942 0.79 -0.1 58,946 + H281DRAFT_01942 0.79 +0.2 58,946 + H281DRAFT_01942 0.79 -0.3 58,974 + H281DRAFT_01942 0.82 -0.1 59,002 + H281DRAFT_01942 0.84 +0.6 59,002 + H281DRAFT_01942 0.84 -0.2 59,003 - H281DRAFT_01942 0.85 +0.3 59,003 - H281DRAFT_01942 0.85 +0.6 59,022 - H281DRAFT_01942 0.86 +0.0 59,158 + +0.8 59,158 + +0.7 59,158 + +0.1 59,159 - -0.2 59,159 - +0.3 59,159 - -0.3 59,159 - +0.3 59,267 + H281DRAFT_01943 0.12 +0.5 59,268 - H281DRAFT_01943 0.12 +0.4 59,524 - +0.5 59,526 - +0.3 59,526 - +1.3 59,526 - +0.4 59,671 + +0.0 59,671 + +0.3 59,671 + -0.1 59,672 - +0.6 59,672 - -0.1 59,687 + +0.0 59,687 + +0.6 59,687 + +0.6 59,687 + -0.7 59,688 - +0.6 59,688 - +0.2 59,688 - -0.5 59,737 + -0.5 59,737 + -0.3 59,737 + -0.3 59,775 - +0.0 59,969 + +0.7 59,969 + +1.0 59,993 + +0.4 59,993 + -0.1 59,994 - -0.1 59,994 - -0.5 59,994 - -0.3 59,994 - +0.5 59,994 - +0.0 59,994 - -1.1 59,994 - -0.1 59,994 - +0.5 59,994 - +0.1 59,994 - +0.1 60,014 - -0.3 60,052 + +0.7 60,052 + +0.2 60,052 + -0.2 60,053 - -0.2 60,053 - +0.1 60,117 - -0.1 60,117 - +0.1 60,136 + -0.3 60,137 - +0.6 60,401 + +0.5 60,401 + +0.3 60,401 + -1.0 60,401 + -0.7 60,402 - -0.0 60,402 - +0.8 60,403 + +0.4 60,403 + -0.2 60,404 - +0.2 60,404 - +1.3 60,461 - H281DRAFT_01944 0.12 -0.1 60,461 - H281DRAFT_01944 0.12 -0.0
Or see this region's nucleotide sequence