Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01930 and H281DRAFT_01931 are separated by 103 nucleotides H281DRAFT_01931 and H281DRAFT_01932 are separated by 39 nucleotides H281DRAFT_01932 and H281DRAFT_01933 are separated by 23 nucleotides
H281DRAFT_01930: H281DRAFT_01930 - Hpr(Ser) kinase/phosphatase, at 47,157 to 48,125
_01930
H281DRAFT_01931: H281DRAFT_01931 - UPF0042 nucleotide-binding protein, at 48,229 to 49,122
_01931
H281DRAFT_01932: H281DRAFT_01932 - hypothetical protein, at 49,162 to 49,797
_01932
H281DRAFT_01933: H281DRAFT_01933 - A/G-specific DNA-adenine glycosylase, at 49,821 to 50,969
_01933
Position (kb) 48
49
50 Strain fitness (log2 ratio) -1
0
1
2 at 48.134 kb on + strand at 48.134 kb on + strand at 48.135 kb on - strand at 48.144 kb on - strand at 48.199 kb on + strand at 48.199 kb on + strand at 48.199 kb on + strand at 48.200 kb on - strand at 48.200 kb on - strand at 48.200 kb on - strand at 48.200 kb on - strand at 48.254 kb on + strand at 48.305 kb on - strand at 48.305 kb on - strand at 48.305 kb on - strand at 48.307 kb on + strand at 48.308 kb on - strand at 48.356 kb on - strand, within H281DRAFT_01931 at 48.797 kb on + strand, within H281DRAFT_01931 at 48.798 kb on - strand, within H281DRAFT_01931 at 48.798 kb on - strand, within H281DRAFT_01931 at 48.798 kb on - strand, within H281DRAFT_01931 at 48.817 kb on + strand, within H281DRAFT_01931 at 48.990 kb on + strand, within H281DRAFT_01931 at 48.991 kb on - strand, within H281DRAFT_01931 at 48.991 kb on - strand, within H281DRAFT_01931 at 49.050 kb on + strand at 49.050 kb on + strand at 49.171 kb on - strand at 49.171 kb on - strand at 49.171 kb on - strand at 49.171 kb on - strand at 49.171 kb on - strand at 49.176 kb on + strand at 49.176 kb on + strand at 49.176 kb on + strand at 49.177 kb on - strand at 49.177 kb on - strand at 49.212 kb on + strand at 49.213 kb on - strand at 49.213 kb on - strand at 49.265 kb on - strand, within H281DRAFT_01932 at 49.504 kb on - strand, within H281DRAFT_01932 at 49.536 kb on - strand, within H281DRAFT_01932 at 49.542 kb on + strand, within H281DRAFT_01932 at 49.542 kb on + strand, within H281DRAFT_01932 at 49.542 kb on + strand, within H281DRAFT_01932 at 49.543 kb on - strand, within H281DRAFT_01932 at 49.691 kb on + strand, within H281DRAFT_01932 at 49.692 kb on - strand, within H281DRAFT_01932 at 49.771 kb on + strand at 49.771 kb on + strand at 49.772 kb on - strand at 49.772 kb on - strand at 49.773 kb on + strand at 49.773 kb on + strand at 49.773 kb on + strand at 49.773 kb on + strand at 49.774 kb on - strand at 49.774 kb on - strand at 49.774 kb on - strand at 49.774 kb on - strand at 49.774 kb on - strand at 49.795 kb on + strand at 49.795 kb on + strand at 49.796 kb on - strand at 49.796 kb on - strand at 49.927 kb on - strand at 49.949 kb on + strand, within H281DRAFT_01933 at 49.949 kb on + strand, within H281DRAFT_01933
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 48,134 + +0.4 48,134 + +0.1 48,135 - -0.7 48,144 - +0.8 48,199 + +0.3 48,199 + -0.3 48,199 + -0.5 48,200 - +0.4 48,200 - -0.6 48,200 - -0.6 48,200 - -0.0 48,254 + +0.3 48,305 - -0.1 48,305 - -0.0 48,305 - +0.7 48,307 + +1.4 48,308 - -0.1 48,356 - H281DRAFT_01931 0.14 +0.2 48,797 + H281DRAFT_01931 0.64 +0.5 48,798 - H281DRAFT_01931 0.64 +0.3 48,798 - H281DRAFT_01931 0.64 -0.5 48,798 - H281DRAFT_01931 0.64 +0.5 48,817 + H281DRAFT_01931 0.66 +0.8 48,990 + H281DRAFT_01931 0.85 +0.9 48,991 - H281DRAFT_01931 0.85 +0.6 48,991 - H281DRAFT_01931 0.85 +0.5 49,050 + +0.1 49,050 + +0.2 49,171 - -0.3 49,171 - +0.2 49,171 - +0.3 49,171 - -0.3 49,171 - +0.3 49,176 + -0.3 49,176 + -0.2 49,176 + +2.0 49,177 - -0.5 49,177 - +0.6 49,212 + -0.4 49,213 - +0.2 49,213 - +0.9 49,265 - H281DRAFT_01932 0.16 +0.4 49,504 - H281DRAFT_01932 0.54 -0.0 49,536 - H281DRAFT_01932 0.59 -0.2 49,542 + H281DRAFT_01932 0.60 +0.1 49,542 + H281DRAFT_01932 0.60 -0.5 49,542 + H281DRAFT_01932 0.60 -0.9 49,543 - H281DRAFT_01932 0.60 -0.3 49,691 + H281DRAFT_01932 0.83 +0.1 49,692 - H281DRAFT_01932 0.83 +0.3 49,771 + -0.0 49,771 + +0.4 49,772 - +0.4 49,772 - +0.2 49,773 + -0.1 49,773 + +0.2 49,773 + +0.4 49,773 + -1.1 49,774 - +0.4 49,774 - +0.2 49,774 - +0.1 49,774 - +0.2 49,774 - +0.6 49,795 + +0.6 49,795 + +0.3 49,796 - +0.7 49,796 - -0.1 49,927 - +0.6 49,949 + H281DRAFT_01933 0.11 +0.5 49,949 + H281DRAFT_01933 0.11 +0.5
Or see this region's nucleotide sequence