Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01688 and H281DRAFT_01689 are separated by 219 nucleotides H281DRAFT_01689 and H281DRAFT_01690 are separated by 137 nucleotides H281DRAFT_01690 and H281DRAFT_01691 are separated by 34 nucleotides
H281DRAFT_01688: H281DRAFT_01688 - aliphatic nitrilase, at 570,929 to 571,915
_01688
H281DRAFT_01689: H281DRAFT_01689 - transcriptional regulator, AraC family with amidase-like domain, at 572,135 to 573,091
_01689
H281DRAFT_01690: H281DRAFT_01690 - ribonuclease T1, at 573,229 to 573,699
_01690
H281DRAFT_01691: H281DRAFT_01691 - hypothetical protein, at 573,734 to 575,374
_01691
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 571.423 kb on - strand, within H281DRAFT_01688 at 571.522 kb on - strand, within H281DRAFT_01688 at 571.759 kb on - strand, within H281DRAFT_01688 at 571.949 kb on - strand at 571.968 kb on + strand at 571.969 kb on - strand at 572.237 kb on + strand, within H281DRAFT_01689 at 572.290 kb on + strand, within H281DRAFT_01689 at 572.783 kb on - strand, within H281DRAFT_01689 at 573.030 kb on - strand at 573.030 kb on - strand at 573.030 kb on - strand at 573.030 kb on - strand at 573.030 kb on - strand at 573.181 kb on - strand at 573.181 kb on - strand at 573.181 kb on - strand at 573.181 kb on - strand at 573.181 kb on - strand at 573.181 kb on - strand at 573.181 kb on - strand at 573.568 kb on + strand, within H281DRAFT_01690 at 573.568 kb on + strand, within H281DRAFT_01690 at 573.569 kb on - strand, within H281DRAFT_01690 at 573.569 kb on - strand, within H281DRAFT_01690 at 573.652 kb on + strand, within H281DRAFT_01690 at 573.653 kb on - strand at 573.670 kb on + strand at 573.777 kb on + strand at 573.777 kb on + strand at 573.843 kb on + strand at 573.912 kb on + strand, within H281DRAFT_01691 at 573.913 kb on - strand, within H281DRAFT_01691 at 574.065 kb on + strand, within H281DRAFT_01691 at 574.066 kb on - strand, within H281DRAFT_01691
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 571,423 - H281DRAFT_01688 0.50 -0.1 571,522 - H281DRAFT_01688 0.60 -0.1 571,759 - H281DRAFT_01688 0.84 -0.4 571,949 - -1.9 571,968 + +0.5 571,969 - -0.1 572,237 + H281DRAFT_01689 0.11 +0.4 572,290 + H281DRAFT_01689 0.16 +0.8 572,783 - H281DRAFT_01689 0.68 +0.8 573,030 - +0.3 573,030 - +0.2 573,030 - -0.9 573,030 - +0.8 573,030 - -0.7 573,181 - -0.1 573,181 - +0.5 573,181 - +0.0 573,181 - +0.6 573,181 - +0.1 573,181 - -1.1 573,181 - +0.5 573,568 + H281DRAFT_01690 0.72 -0.0 573,568 + H281DRAFT_01690 0.72 +0.0 573,569 - H281DRAFT_01690 0.72 -0.4 573,569 - H281DRAFT_01690 0.72 +0.1 573,652 + H281DRAFT_01690 0.90 +0.1 573,653 - -0.0 573,670 + -0.2 573,777 + +0.1 573,777 + +0.3 573,843 + +0.2 573,912 + H281DRAFT_01691 0.11 -0.2 573,913 - H281DRAFT_01691 0.11 +0.0 574,065 + H281DRAFT_01691 0.20 +0.2 574,066 - H281DRAFT_01691 0.20 +0.1
Or see this region's nucleotide sequence