Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01590

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01588 and H281DRAFT_01589 are separated by 81 nucleotidesH281DRAFT_01589 and H281DRAFT_01590 overlap by 25 nucleotidesH281DRAFT_01590 and H281DRAFT_01591 are separated by 21 nucleotides H281DRAFT_01588: H281DRAFT_01588 - Amino acid synthesis, at 467,272 to 467,856 _01588 H281DRAFT_01589: H281DRAFT_01589 - Amino acid synthesis, at 467,938 to 468,528 _01589 H281DRAFT_01590: H281DRAFT_01590 - hypothetical protein, at 468,504 to 469,445 _01590 H281DRAFT_01591: H281DRAFT_01591 - 6-hydroxynicotinate reductase, at 469,467 to 471,074 _01591 Position (kb) 468 469 470Strain fitness (log2 ratio) -1 0 1at 467.834 kb on - strandat 468.098 kb on + strand, within H281DRAFT_01589at 469.066 kb on - strand, within H281DRAFT_01590at 469.170 kb on - strand, within H281DRAFT_01590at 469.445 kb on + strandat 469.710 kb on + strand, within H281DRAFT_01591at 469.711 kb on - strand, within H281DRAFT_01591at 469.750 kb on + strand, within H281DRAFT_01591at 469.750 kb on + strand, within H281DRAFT_01591at 469.750 kb on + strand, within H281DRAFT_01591at 469.976 kb on - strand, within H281DRAFT_01591at 469.976 kb on - strand, within H281DRAFT_01591

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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467,834 - -0.1
468,098 + H281DRAFT_01589 0.27 -0.6
469,066 - H281DRAFT_01590 0.60 +0.8
469,170 - H281DRAFT_01590 0.71 +0.4
469,445 + +0.1
469,710 + H281DRAFT_01591 0.15 +0.5
469,711 - H281DRAFT_01591 0.15 -0.1
469,750 + H281DRAFT_01591 0.18 -1.0
469,750 + H281DRAFT_01591 0.18 +0.3
469,750 + H281DRAFT_01591 0.18 -0.7
469,976 - H281DRAFT_01591 0.32 +1.0
469,976 - H281DRAFT_01591 0.32 +1.0

Or see this region's nucleotide sequence