Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01571 and H281DRAFT_01572 are separated by 133 nucleotides H281DRAFT_01572 and H281DRAFT_01573 are separated by 79 nucleotides
H281DRAFT_01571: H281DRAFT_01571 - Nucleoside-diphosphate-sugar epimerase, at 446,155 to 447,198
_01571
H281DRAFT_01572: H281DRAFT_01572 - Predicted oxidoreductase, at 447,332 to 448,351
_01572
H281DRAFT_01573: H281DRAFT_01573 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 448,431 to 449,297
_01573
Position (kb) 447
448
449 Strain fitness (log2 ratio) -1
0
1 at 446.511 kb on + strand, within H281DRAFT_01571 at 446.511 kb on + strand, within H281DRAFT_01571 at 446.764 kb on + strand, within H281DRAFT_01571 at 447.093 kb on + strand, within H281DRAFT_01571 at 447.094 kb on - strand at 447.151 kb on + strand at 447.151 kb on + strand at 447.152 kb on - strand at 447.152 kb on - strand at 447.187 kb on + strand at 447.187 kb on + strand at 447.188 kb on - strand at 447.402 kb on - strand at 447.461 kb on - strand, within H281DRAFT_01572 at 447.584 kb on + strand, within H281DRAFT_01572 at 447.613 kb on + strand, within H281DRAFT_01572 at 448.167 kb on + strand, within H281DRAFT_01572 at 448.255 kb on + strand at 448.395 kb on + strand at 448.630 kb on - strand, within H281DRAFT_01573 at 449.319 kb on + strand at 449.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 446,511 + H281DRAFT_01571 0.34 -0.3 446,511 + H281DRAFT_01571 0.34 +0.1 446,764 + H281DRAFT_01571 0.58 +0.1 447,093 + H281DRAFT_01571 0.90 -0.7 447,094 - -0.1 447,151 + -0.0 447,151 + +0.4 447,152 - -0.5 447,152 - -0.4 447,187 + +0.8 447,187 + -0.1 447,188 - +0.2 447,402 - +0.4 447,461 - H281DRAFT_01572 0.13 -1.7 447,584 + H281DRAFT_01572 0.25 +0.6 447,613 + H281DRAFT_01572 0.28 +1.4 448,167 + H281DRAFT_01572 0.82 -0.0 448,255 + +0.1 448,395 + +0.3 448,630 - H281DRAFT_01573 0.23 +0.7 449,319 + -0.0 449,320 - +0.5
Or see this region's nucleotide sequence