Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01508

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01507 and H281DRAFT_01508 are separated by 65 nucleotidesH281DRAFT_01508 and H281DRAFT_01509 overlap by 4 nucleotides H281DRAFT_01507: H281DRAFT_01507 - D-galactonate transporter, at 377,138 to 378,472 _01507 H281DRAFT_01508: H281DRAFT_01508 - Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase, at 378,538 to 379,200 _01508 H281DRAFT_01509: H281DRAFT_01509 - Uncharacterized conserved protein YgbK, DUF1537 family, at 379,197 to 380,507 _01509 Position (kb) 378 379 380Strain fitness (log2 ratio) -2 -1 0 1at 377.587 kb on + strand, within H281DRAFT_01507at 378.097 kb on - strand, within H281DRAFT_01507at 378.097 kb on - strand, within H281DRAFT_01507at 378.151 kb on + strand, within H281DRAFT_01507at 378.152 kb on - strand, within H281DRAFT_01507at 378.263 kb on + strand, within H281DRAFT_01507at 378.345 kb on + strandat 378.495 kb on + strandat 378.815 kb on + strand, within H281DRAFT_01508at 378.816 kb on - strand, within H281DRAFT_01508at 378.816 kb on - strand, within H281DRAFT_01508at 378.933 kb on - strand, within H281DRAFT_01508at 378.933 kb on - strand, within H281DRAFT_01508at 378.933 kb on - strandat 379.145 kb on - strandat 379.535 kb on - strand, within H281DRAFT_01509

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
377,587 + H281DRAFT_01507 0.34 +0.1
378,097 - H281DRAFT_01507 0.72 -0.3
378,097 - H281DRAFT_01507 0.72 +0.6
378,151 + H281DRAFT_01507 0.76 +0.0
378,152 - H281DRAFT_01507 0.76 +0.4
378,263 + H281DRAFT_01507 0.84 +0.3
378,345 + -0.0
378,495 + +0.1
378,815 + H281DRAFT_01508 0.42 +0.1
378,816 - H281DRAFT_01508 0.42 -2.3
378,816 - H281DRAFT_01508 0.42 +0.7
378,933 - H281DRAFT_01508 0.60 +0.1
378,933 - H281DRAFT_01508 0.60 -0.1
378,933 - +0.8
379,145 - -0.8
379,535 - H281DRAFT_01509 0.26 +1.3

Or see this region's nucleotide sequence