Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01357 and H281DRAFT_01358 are separated by 102 nucleotides H281DRAFT_01358 and H281DRAFT_01359 are separated by 135 nucleotides H281DRAFT_01359 and H281DRAFT_01360 are separated by 542 nucleotides
H281DRAFT_01357: H281DRAFT_01357 - transcriptional regulator, LysR family, at 200,560 to 201,522
_01357
H281DRAFT_01358: H281DRAFT_01358 - Uncharacterized protein, RmlC-like cupin domain, at 201,625 to 202,041
_01358
H281DRAFT_01359: H281DRAFT_01359 - hypothetical protein, at 202,177 to 202,359
_01359
H281DRAFT_01360: H281DRAFT_01360 - transcriptional regulator, TetR family, at 202,902 to 203,516
_01360
Position (kb) 201
202
203 Strain fitness (log2 ratio) -1
0
1 at 200.708 kb on + strand, within H281DRAFT_01357 at 200.747 kb on + strand, within H281DRAFT_01357 at 200.752 kb on + strand, within H281DRAFT_01357 at 200.819 kb on - strand, within H281DRAFT_01357 at 200.877 kb on + strand, within H281DRAFT_01357 at 200.921 kb on + strand, within H281DRAFT_01357 at 201.071 kb on - strand, within H281DRAFT_01357 at 201.225 kb on + strand, within H281DRAFT_01357 at 201.709 kb on + strand, within H281DRAFT_01358 at 201.760 kb on + strand, within H281DRAFT_01358 at 202.178 kb on + strand at 202.179 kb on - strand at 202.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 200,708 + H281DRAFT_01357 0.15 +0.8 200,747 + H281DRAFT_01357 0.19 +0.0 200,752 + H281DRAFT_01357 0.20 -0.6 200,819 - H281DRAFT_01357 0.27 +0.4 200,877 + H281DRAFT_01357 0.33 +0.2 200,921 + H281DRAFT_01357 0.37 -0.4 201,071 - H281DRAFT_01357 0.53 +0.2 201,225 + H281DRAFT_01357 0.69 -1.0 201,709 + H281DRAFT_01358 0.20 +0.4 201,760 + H281DRAFT_01358 0.32 +0.6 202,178 + +0.2 202,179 - -0.4 202,619 + -0.5
Or see this region's nucleotide sequence