Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01127 and H281DRAFT_01128 are separated by 6 nucleotides H281DRAFT_01128 and H281DRAFT_01129 are separated by 74 nucleotides H281DRAFT_01129 and H281DRAFT_01130 are separated by 133 nucleotides
H281DRAFT_01127: H281DRAFT_01127 - Molecular chaperone, at 1,269,560 to 1,272,529
_01127
H281DRAFT_01128: H281DRAFT_01128 - phosphonoacetaldehyde hydrolase, at 1,272,536 to 1,273,339
_01128
H281DRAFT_01129: H281DRAFT_01129 - 2-aminoethylphosphonate-pyruvate transaminase, at 1,273,414 to 1,274,664
_01129
H281DRAFT_01130: H281DRAFT_01130 - transcriptional regulator, LysR family, at 1,274,798 to 1,275,676
_01130
Position (kb) 1273
1274
1275 Strain fitness (log2 ratio) -1
0
1
2 at 1272.846 kb on + strand, within H281DRAFT_01128 at 1272.855 kb on + strand, within H281DRAFT_01128 at 1272.855 kb on + strand, within H281DRAFT_01128 at 1272.855 kb on + strand, within H281DRAFT_01128 at 1272.856 kb on - strand, within H281DRAFT_01128 at 1272.856 kb on - strand, within H281DRAFT_01128 at 1273.043 kb on - strand at 1273.043 kb on - strand, within H281DRAFT_01128 at 1273.086 kb on + strand, within H281DRAFT_01128 at 1273.125 kb on + strand, within H281DRAFT_01128 at 1273.125 kb on + strand, within H281DRAFT_01128 at 1273.125 kb on + strand, within H281DRAFT_01128 at 1273.125 kb on + strand, within H281DRAFT_01128 at 1273.126 kb on - strand at 1273.126 kb on - strand, within H281DRAFT_01128 at 1273.126 kb on - strand, within H281DRAFT_01128 at 1273.233 kb on - strand, within H281DRAFT_01128 at 1273.287 kb on + strand at 1273.513 kb on + strand at 1273.595 kb on + strand, within H281DRAFT_01129 at 1273.596 kb on - strand, within H281DRAFT_01129 at 1273.840 kb on - strand, within H281DRAFT_01129 at 1274.179 kb on - strand, within H281DRAFT_01129 at 1274.376 kb on - strand, within H281DRAFT_01129 at 1274.559 kb on - strand at 1274.718 kb on + strand at 1274.763 kb on + strand at 1274.795 kb on + strand at 1274.795 kb on + strand at 1274.805 kb on - strand at 1275.007 kb on + strand, within H281DRAFT_01130 at 1275.007 kb on + strand at 1275.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 1,272,846 + H281DRAFT_01128 0.39 +0.2 1,272,855 + H281DRAFT_01128 0.40 -1.2 1,272,855 + H281DRAFT_01128 0.40 -0.1 1,272,855 + H281DRAFT_01128 0.40 +0.5 1,272,856 - H281DRAFT_01128 0.40 -0.2 1,272,856 - H281DRAFT_01128 0.40 +0.0 1,273,043 - -0.8 1,273,043 - H281DRAFT_01128 0.63 -0.4 1,273,086 + H281DRAFT_01128 0.68 +0.4 1,273,125 + H281DRAFT_01128 0.73 +0.5 1,273,125 + H281DRAFT_01128 0.73 -0.4 1,273,125 + H281DRAFT_01128 0.73 -0.6 1,273,125 + H281DRAFT_01128 0.73 -0.3 1,273,126 - +1.9 1,273,126 - H281DRAFT_01128 0.73 -0.0 1,273,126 - H281DRAFT_01128 0.73 +0.4 1,273,233 - H281DRAFT_01128 0.87 -0.0 1,273,287 + -0.1 1,273,513 + -1.2 1,273,595 + H281DRAFT_01129 0.14 +0.0 1,273,596 - H281DRAFT_01129 0.15 -0.9 1,273,840 - H281DRAFT_01129 0.34 -0.5 1,274,179 - H281DRAFT_01129 0.61 +0.1 1,274,376 - H281DRAFT_01129 0.77 -0.1 1,274,559 - -1.1 1,274,718 + +0.6 1,274,763 + -0.6 1,274,795 + -0.6 1,274,795 + +0.8 1,274,805 - +0.6 1,275,007 + H281DRAFT_01130 0.24 -0.8 1,275,007 + -1.5 1,275,447 - +0.6
Or see this region's nucleotide sequence