Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00997

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00995 and H281DRAFT_00996 are separated by 194 nucleotidesH281DRAFT_00996 and H281DRAFT_00997 are separated by 41 nucleotidesH281DRAFT_00997 and H281DRAFT_00998 are separated by 656 nucleotides H281DRAFT_00995: H281DRAFT_00995 - transcriptional regulator, LysR family, at 1,117,372 to 1,118,373 _00995 H281DRAFT_00996: H281DRAFT_00996 - ChrR Cupin-like domain-containing protein, at 1,118,568 to 1,118,978 _00996 H281DRAFT_00997: H281DRAFT_00997 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 1,119,020 to 1,120,171 _00997 H281DRAFT_00998: H281DRAFT_00998 - outer membrane protein, multidrug efflux system, at 1,120,828 to 1,122,285 _00998 Position (kb) 1119 1120 1121Strain fitness (log2 ratio) -1 0 1at 1118.288 kb on - strandat 1118.529 kb on + strandat 1118.897 kb on + strand, within H281DRAFT_00996at 1119.342 kb on - strand, within H281DRAFT_00997at 1119.811 kb on + strand, within H281DRAFT_00997at 1120.520 kb on + strandat 1120.633 kb on + strandat 1120.860 kb on - strandat 1120.922 kb on + strandat 1120.977 kb on - strand, within H281DRAFT_00998at 1121.051 kb on + strand, within H281DRAFT_00998

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,118,288 - +0.6
1,118,529 + +1.1
1,118,897 + H281DRAFT_00996 0.80 +0.1
1,119,342 - H281DRAFT_00997 0.28 +0.1
1,119,811 + H281DRAFT_00997 0.69 +0.9
1,120,520 + +0.6
1,120,633 + -0.3
1,120,860 - -0.3
1,120,922 + +0.8
1,120,977 - H281DRAFT_00998 0.10 +0.0
1,121,051 + H281DRAFT_00998 0.15 +0.6

Or see this region's nucleotide sequence