Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00419 and H281DRAFT_00420 are separated by 227 nucleotides H281DRAFT_00420 and H281DRAFT_00421 are separated by 367 nucleotides H281DRAFT_00421 and H281DRAFT_00422 are separated by 101 nucleotides H281DRAFT_00422 and H281DRAFT_00423 are separated by 153 nucleotides
H281DRAFT_00419: H281DRAFT_00419 - transcriptional regulator, LacI family, at 460,256 to 461,323
_00419
H281DRAFT_00420: H281DRAFT_00420 - tRNA_Leu_TAA, at 461,551 to 461,635
_00420
H281DRAFT_00421: H281DRAFT_00421 - hypothetical protein, at 462,003 to 462,206
_00421
H281DRAFT_00422: H281DRAFT_00422 - hypothetical protein, at 462,308 to 462,418
_00422
H281DRAFT_00423: H281DRAFT_00423 - hypothetical protein, at 462,572 to 462,796
_00423
Position (kb) 462
463 Strain fitness (log2 ratio) -2
-1
0
1 at 461.341 kb on - strand at 461.853 kb on + strand at 461.970 kb on + strand at 461.970 kb on + strand at 461.970 kb on + strand at 461.971 kb on - strand at 461.971 kb on - strand at 462.083 kb on - strand, within H281DRAFT_00421 at 462.216 kb on - strand at 462.245 kb on - strand at 462.370 kb on - strand, within H281DRAFT_00422 at 462.370 kb on - strand, within H281DRAFT_00422 at 462.372 kb on + strand, within H281DRAFT_00422 at 462.473 kb on + strand at 462.474 kb on - strand at 462.479 kb on - strand at 462.580 kb on + strand at 462.580 kb on + strand at 462.580 kb on + strand at 462.619 kb on + strand, within H281DRAFT_00423 at 462.619 kb on + strand, within H281DRAFT_00423 at 462.619 kb on + strand, within H281DRAFT_00423 at 462.620 kb on - strand, within H281DRAFT_00423 at 462.620 kb on - strand, within H281DRAFT_00423 at 462.625 kb on + strand, within H281DRAFT_00423 at 462.664 kb on - strand, within H281DRAFT_00423 at 462.664 kb on - strand, within H281DRAFT_00423 at 462.821 kb on + strand at 462.919 kb on - strand at 462.998 kb on + strand at 462.999 kb on - strand at 463.078 kb on - strand at 463.078 kb on - strand at 463.116 kb on - strand at 463.219 kb on + strand at 463.219 kb on + strand at 463.230 kb on - strand at 463.343 kb on - strand at 463.376 kb on - strand at 463.399 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 461,341 - -0.1 461,853 + +0.0 461,970 + -0.2 461,970 + +0.1 461,970 + -0.2 461,971 - +0.3 461,971 - -1.5 462,083 - H281DRAFT_00421 0.39 -1.2 462,216 - -0.4 462,245 - +0.7 462,370 - H281DRAFT_00422 0.56 -0.1 462,370 - H281DRAFT_00422 0.56 +1.0 462,372 + H281DRAFT_00422 0.58 +0.5 462,473 + -0.2 462,474 - +0.2 462,479 - +0.3 462,580 + -0.1 462,580 + -0.2 462,580 + +1.2 462,619 + H281DRAFT_00423 0.21 -0.2 462,619 + H281DRAFT_00423 0.21 +0.5 462,619 + H281DRAFT_00423 0.21 -0.6 462,620 - H281DRAFT_00423 0.21 -0.4 462,620 - H281DRAFT_00423 0.21 +0.7 462,625 + H281DRAFT_00423 0.24 +0.9 462,664 - H281DRAFT_00423 0.41 -0.8 462,664 - H281DRAFT_00423 0.41 -0.4 462,821 + +1.3 462,919 - +0.3 462,998 + -0.2 462,999 - +0.3 463,078 - +0.2 463,078 - +0.7 463,116 - +0.0 463,219 + -0.5 463,219 + -2.3 463,230 - +0.1 463,343 - -0.1 463,376 - -0.2 463,399 + +0.0
Or see this region's nucleotide sequence