Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00416 and H281DRAFT_00417 are separated by 49 nucleotides H281DRAFT_00417 and H281DRAFT_00418 overlap by 4 nucleotides H281DRAFT_00418 and H281DRAFT_00419 are separated by 47 nucleotides
H281DRAFT_00416: H281DRAFT_00416 - putative spermidine/putrescine transport system permease protein, at 457,353 to 458,258
_00416
H281DRAFT_00417: H281DRAFT_00417 - putative spermidine/putrescine transport system permease protein, at 458,308 to 459,132
_00417
H281DRAFT_00418: H281DRAFT_00418 - putative spermidine/putrescine transport system substrate-binding protein, at 459,129 to 460,208
_00418
H281DRAFT_00419: H281DRAFT_00419 - transcriptional regulator, LacI family, at 460,256 to 461,323
_00419
Position (kb) 459
460
461 Strain fitness (log2 ratio) -1
0
1
2 at 458.247 kb on - strand at 458.439 kb on - strand, within H281DRAFT_00417 at 458.456 kb on - strand, within H281DRAFT_00417 at 458.574 kb on + strand, within H281DRAFT_00417 at 458.681 kb on + strand, within H281DRAFT_00417 at 458.687 kb on + strand, within H281DRAFT_00417 at 458.911 kb on + strand, within H281DRAFT_00417 at 459.120 kb on + strand at 459.120 kb on + strand at 459.148 kb on + strand at 459.215 kb on - strand at 459.386 kb on - strand, within H281DRAFT_00418 at 459.683 kb on - strand, within H281DRAFT_00418 at 459.788 kb on - strand, within H281DRAFT_00418 at 460.896 kb on + strand, within H281DRAFT_00419 at 460.897 kb on - strand, within H281DRAFT_00419 at 460.897 kb on - strand, within H281DRAFT_00419
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 458,247 - +0.6 458,439 - H281DRAFT_00417 0.16 +0.1 458,456 - H281DRAFT_00417 0.18 +0.3 458,574 + H281DRAFT_00417 0.32 -0.2 458,681 + H281DRAFT_00417 0.45 -0.4 458,687 + H281DRAFT_00417 0.46 +0.6 458,911 + H281DRAFT_00417 0.73 -0.1 459,120 + +0.4 459,120 + +1.0 459,148 + -0.1 459,215 - +0.6 459,386 - H281DRAFT_00418 0.24 +0.5 459,683 - H281DRAFT_00418 0.51 +1.8 459,788 - H281DRAFT_00418 0.61 +0.3 460,896 + H281DRAFT_00419 0.60 +0.2 460,897 - H281DRAFT_00419 0.60 -0.1 460,897 - H281DRAFT_00419 0.60 +0.7
Or see this region's nucleotide sequence