Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00270

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00269 and H281DRAFT_00270 are separated by 166 nucleotidesH281DRAFT_00270 and H281DRAFT_00271 are separated by 54 nucleotides H281DRAFT_00269: H281DRAFT_00269 - phenazine biosynthesis protein PhzF family, at 287,490 to 288,392 _00269 H281DRAFT_00270: H281DRAFT_00270 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 288,559 to 289,023 _00270 H281DRAFT_00271: H281DRAFT_00271 - 2-aminoadipate transaminase, at 289,078 to 290,274 _00271 Position (kb) 288 289 290Strain fitness (log2 ratio) -1 0 1at 287.620 kb on + strandat 287.637 kb on + strand, within H281DRAFT_00269at 287.777 kb on - strand, within H281DRAFT_00269at 287.916 kb on - strand, within H281DRAFT_00269at 287.966 kb on - strand, within H281DRAFT_00269at 288.440 kb on - strandat 288.440 kb on - strandat 288.911 kb on + strand, within H281DRAFT_00270at 288.912 kb on - strand, within H281DRAFT_00270at 288.912 kb on - strand, within H281DRAFT_00270at 288.912 kb on - strand, within H281DRAFT_00270at 288.918 kb on + strand, within H281DRAFT_00270at 288.919 kb on - strand, within H281DRAFT_00270at 288.919 kb on - strand, within H281DRAFT_00270at 289.004 kb on + strandat 289.012 kb on - strandat 289.332 kb on - strand, within H281DRAFT_00271at 289.332 kb on - strand, within H281DRAFT_00271at 289.496 kb on + strand, within H281DRAFT_00271at 289.523 kb on + strand, within H281DRAFT_00271at 289.524 kb on - strand, within H281DRAFT_00271at 289.524 kb on - strand, within H281DRAFT_00271at 289.626 kb on - strand, within H281DRAFT_00271at 289.755 kb on - strand, within H281DRAFT_00271at 289.835 kb on + strand, within H281DRAFT_00271at 289.847 kb on + strand, within H281DRAFT_00271at 289.847 kb on + strandat 289.877 kb on + strand, within H281DRAFT_00271at 289.878 kb on - strand, within H281DRAFT_00271

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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287,620 + +1.6
287,637 + H281DRAFT_00269 0.16 +0.6
287,777 - H281DRAFT_00269 0.32 +0.3
287,916 - H281DRAFT_00269 0.47 +0.5
287,966 - H281DRAFT_00269 0.53 +0.6
288,440 - -0.3
288,440 - +0.1
288,911 + H281DRAFT_00270 0.76 -0.9
288,912 - H281DRAFT_00270 0.76 +0.1
288,912 - H281DRAFT_00270 0.76 +0.1
288,912 - H281DRAFT_00270 0.76 -0.3
288,918 + H281DRAFT_00270 0.77 -1.3
288,919 - H281DRAFT_00270 0.77 -0.8
288,919 - H281DRAFT_00270 0.77 -0.5
289,004 + -0.0
289,012 - -0.8
289,332 - H281DRAFT_00271 0.21 -0.3
289,332 - H281DRAFT_00271 0.21 -0.0
289,496 + H281DRAFT_00271 0.35 +0.1
289,523 + H281DRAFT_00271 0.37 +0.0
289,524 - H281DRAFT_00271 0.37 -0.7
289,524 - H281DRAFT_00271 0.37 -0.0
289,626 - H281DRAFT_00271 0.46 +0.5
289,755 - H281DRAFT_00271 0.57 -0.4
289,835 + H281DRAFT_00271 0.63 +0.0
289,847 + H281DRAFT_00271 0.64 -0.8
289,847 + +0.4
289,877 + H281DRAFT_00271 0.67 +0.1
289,878 - H281DRAFT_00271 0.67 +0.2

Or see this region's nucleotide sequence