Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00268 and H281DRAFT_00269 are separated by 587 nucleotides H281DRAFT_00269 and H281DRAFT_00270 are separated by 166 nucleotides H281DRAFT_00270 and H281DRAFT_00271 are separated by 54 nucleotides
H281DRAFT_00268: H281DRAFT_00268 - diguanylate cyclase/phosphodiesterase, at 284,551 to 286,902
_00268
H281DRAFT_00269: H281DRAFT_00269 - phenazine biosynthesis protein PhzF family, at 287,490 to 288,392
_00269
H281DRAFT_00270: H281DRAFT_00270 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 288,559 to 289,023
_00270
H281DRAFT_00271: H281DRAFT_00271 - 2-aminoadipate transaminase, at 289,078 to 290,274
_00271
Position (kb) 287
288
289 Strain fitness (log2 ratio) -1
0
1 at 286.736 kb on + strand at 286.736 kb on + strand at 286.736 kb on + strand at 286.737 kb on - strand at 286.737 kb on - strand at 286.801 kb on + strand at 286.802 kb on - strand at 287.000 kb on + strand at 287.053 kb on + strand at 287.054 kb on - strand at 287.066 kb on + strand at 287.066 kb on + strand at 287.197 kb on - strand at 287.252 kb on + strand at 287.471 kb on + strand at 287.472 kb on - strand at 287.472 kb on - strand at 287.472 kb on - strand at 287.472 kb on - strand at 287.620 kb on + strand at 287.637 kb on + strand, within H281DRAFT_00269 at 287.777 kb on - strand, within H281DRAFT_00269 at 287.916 kb on - strand, within H281DRAFT_00269 at 287.966 kb on - strand, within H281DRAFT_00269 at 288.440 kb on - strand at 288.440 kb on - strand at 288.911 kb on + strand, within H281DRAFT_00270 at 288.912 kb on - strand, within H281DRAFT_00270 at 288.912 kb on - strand, within H281DRAFT_00270 at 288.912 kb on - strand, within H281DRAFT_00270 at 288.918 kb on + strand, within H281DRAFT_00270 at 288.919 kb on - strand, within H281DRAFT_00270 at 288.919 kb on - strand, within H281DRAFT_00270 at 289.004 kb on + strand at 289.012 kb on - strand at 289.332 kb on - strand, within H281DRAFT_00271 at 289.332 kb on - strand, within H281DRAFT_00271
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 286,736 + -0.6 286,736 + -0.6 286,736 + -0.5 286,737 - +0.4 286,737 - -0.2 286,801 + -0.6 286,802 - -0.2 287,000 + +0.5 287,053 + +0.5 287,054 - -0.1 287,066 + +0.3 287,066 + +0.5 287,197 - -0.2 287,252 + -0.5 287,471 + +0.0 287,472 - +0.2 287,472 - +1.1 287,472 - -0.0 287,472 - -0.0 287,620 + +1.6 287,637 + H281DRAFT_00269 0.16 +0.6 287,777 - H281DRAFT_00269 0.32 +0.3 287,916 - H281DRAFT_00269 0.47 +0.5 287,966 - H281DRAFT_00269 0.53 +0.6 288,440 - -0.3 288,440 - +0.1 288,911 + H281DRAFT_00270 0.76 -0.9 288,912 - H281DRAFT_00270 0.76 +0.1 288,912 - H281DRAFT_00270 0.76 +0.1 288,912 - H281DRAFT_00270 0.76 -0.3 288,918 + H281DRAFT_00270 0.77 -1.3 288,919 - H281DRAFT_00270 0.77 -0.8 288,919 - H281DRAFT_00270 0.77 -0.5 289,004 + -0.0 289,012 - -0.8 289,332 - H281DRAFT_00271 0.21 -0.3 289,332 - H281DRAFT_00271 0.21 -0.0
Or see this region's nucleotide sequence