Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00193

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00192 and H281DRAFT_00193 are separated by 408 nucleotidesH281DRAFT_00193 and H281DRAFT_00194 are separated by 187 nucleotides H281DRAFT_00192: H281DRAFT_00192 - metabolite-proton symporter, at 205,530 to 206,837 _00192 H281DRAFT_00193: H281DRAFT_00193 - protein TonB, at 207,246 to 207,785 _00193 H281DRAFT_00194: H281DRAFT_00194 - argininosuccinate lyase, at 207,973 to 209,379 _00194 Position (kb) 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1at 206.720 kb on - strandat 206.726 kb on - strandat 206.734 kb on + strandat 206.735 kb on - strandat 206.852 kb on + strandat 206.853 kb on - strandat 206.853 kb on - strandat 206.996 kb on - strandat 206.996 kb on - strandat 207.191 kb on - strandat 207.443 kb on - strand, within H281DRAFT_00193at 207.534 kb on + strand, within H281DRAFT_00193at 207.535 kb on - strand, within H281DRAFT_00193at 207.535 kb on - strand, within H281DRAFT_00193at 207.538 kb on + strand, within H281DRAFT_00193at 207.538 kb on + strand, within H281DRAFT_00193at 207.539 kb on - strand, within H281DRAFT_00193at 207.797 kb on - strandat 207.816 kb on + strandat 207.817 kb on - strandat 207.873 kb on + strandat 208.347 kb on + strand, within H281DRAFT_00194at 208.410 kb on - strand, within H281DRAFT_00194at 208.589 kb on - strand, within H281DRAFT_00194

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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206,720 - +0.1
206,726 - +0.3
206,734 + -0.1
206,735 - -1.0
206,852 + +0.0
206,853 - +0.2
206,853 - -0.8
206,996 - +0.2
206,996 - -0.2
207,191 - +0.1
207,443 - H281DRAFT_00193 0.36 +0.7
207,534 + H281DRAFT_00193 0.53 -0.4
207,535 - H281DRAFT_00193 0.54 +0.1
207,535 - H281DRAFT_00193 0.54 -0.8
207,538 + H281DRAFT_00193 0.54 +0.1
207,538 + H281DRAFT_00193 0.54 -0.4
207,539 - H281DRAFT_00193 0.54 -0.5
207,797 - +0.1
207,816 + -0.2
207,817 - -0.1
207,873 + +0.5
208,347 + H281DRAFT_00194 0.27 -2.8
208,410 - H281DRAFT_00194 0.31 -1.2
208,589 - H281DRAFT_00194 0.44 -3.5

Or see this region's nucleotide sequence