Experiment: m.b. Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05300 and PGA1_c05310 are separated by 18 nucleotides PGA1_c05310 and PGA1_c05320 overlap by 4 nucleotides PGA1_c05320 and PGA1_c05330 overlap by 4 nucleotides PGA1_c05330 and PGA1_c05340 overlap by 4 nucleotides
PGA1_c05300: PGA1_c05300 - putative glycosyl transferase, at 526,502 to 527,719
_c05300
PGA1_c05310: PGA1_c05310 - putative glycosyl transferase, at 527,738 to 528,580
_c05310
PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147
_c05320
PGA1_c05330: PGA1_c05330 - hypothetical protein, at 531,144 to 532,046
_c05330
PGA1_c05340: PGA1_c05340 - 4'-phosphopantetheinyl transferase-like protein, at 532,043 to 532,756
_c05340
Position (kb) 528
529
530
531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 527.578 kb on - strand, within PGA1_c05300 at 527.590 kb on + strand, within PGA1_c05300 at 527.618 kb on - strand at 527.636 kb on + strand at 527.686 kb on + strand at 527.729 kb on + strand at 527.731 kb on + strand at 527.827 kb on - strand, within PGA1_c05310 at 527.850 kb on - strand, within PGA1_c05310 at 527.862 kb on - strand, within PGA1_c05310 at 527.866 kb on + strand, within PGA1_c05310 at 527.876 kb on + strand, within PGA1_c05310 at 527.891 kb on + strand, within PGA1_c05310 at 527.953 kb on + strand, within PGA1_c05310 at 528.030 kb on + strand, within PGA1_c05310 at 528.085 kb on - strand, within PGA1_c05310 at 528.096 kb on + strand, within PGA1_c05310 at 528.122 kb on + strand, within PGA1_c05310 at 528.132 kb on - strand, within PGA1_c05310 at 528.132 kb on - strand, within PGA1_c05310 at 528.146 kb on + strand, within PGA1_c05310 at 528.156 kb on + strand, within PGA1_c05310 at 528.159 kb on - strand, within PGA1_c05310 at 528.164 kb on - strand, within PGA1_c05310 at 528.172 kb on + strand, within PGA1_c05310 at 528.177 kb on - strand, within PGA1_c05310 at 528.198 kb on + strand, within PGA1_c05310 at 528.240 kb on + strand, within PGA1_c05310 at 528.240 kb on - strand, within PGA1_c05310 at 528.252 kb on + strand, within PGA1_c05310 at 528.252 kb on + strand, within PGA1_c05310 at 528.257 kb on + strand, within PGA1_c05310 at 528.260 kb on - strand, within PGA1_c05310 at 528.260 kb on - strand, within PGA1_c05310 at 528.260 kb on - strand, within PGA1_c05310 at 528.313 kb on - strand, within PGA1_c05310 at 528.313 kb on - strand, within PGA1_c05310 at 528.363 kb on + strand, within PGA1_c05310 at 528.363 kb on + strand, within PGA1_c05310 at 528.363 kb on + strand, within PGA1_c05310 at 528.363 kb on + strand, within PGA1_c05310 at 528.371 kb on - strand, within PGA1_c05310 at 528.371 kb on - strand, within PGA1_c05310 at 528.371 kb on - strand, within PGA1_c05310 at 528.382 kb on + strand, within PGA1_c05310 at 528.390 kb on + strand, within PGA1_c05310 at 528.424 kb on + strand, within PGA1_c05310 at 528.441 kb on + strand, within PGA1_c05310 at 528.522 kb on + strand at 528.545 kb on - strand at 528.637 kb on + strand at 528.637 kb on + strand at 528.669 kb on - strand at 528.688 kb on - strand at 528.692 kb on + strand at 528.702 kb on + strand at 528.710 kb on - strand at 528.710 kb on - strand at 528.725 kb on + strand at 528.725 kb on + strand at 528.791 kb on - strand at 528.804 kb on + strand at 528.854 kb on - strand, within PGA1_c05320 at 528.884 kb on + strand, within PGA1_c05320 at 528.888 kb on + strand, within PGA1_c05320 at 528.892 kb on - strand, within PGA1_c05320 at 528.951 kb on + strand, within PGA1_c05320 at 528.996 kb on + strand, within PGA1_c05320 at 529.011 kb on - strand, within PGA1_c05320 at 529.021 kb on + strand, within PGA1_c05320 at 529.028 kb on + strand, within PGA1_c05320 at 529.028 kb on + strand, within PGA1_c05320 at 529.028 kb on + strand, within PGA1_c05320 at 529.036 kb on - strand, within PGA1_c05320 at 529.126 kb on - strand, within PGA1_c05320 at 529.171 kb on - strand, within PGA1_c05320 at 529.171 kb on - strand, within PGA1_c05320 at 529.245 kb on - strand, within PGA1_c05320 at 529.295 kb on + strand, within PGA1_c05320 at 529.295 kb on + strand, within PGA1_c05320 at 529.295 kb on + strand, within PGA1_c05320 at 529.298 kb on - strand, within PGA1_c05320 at 529.303 kb on - strand, within PGA1_c05320 at 529.303 kb on - strand, within PGA1_c05320 at 529.336 kb on - strand, within PGA1_c05320 at 529.336 kb on - strand, within PGA1_c05320 at 529.385 kb on + strand, within PGA1_c05320 at 529.439 kb on - strand, within PGA1_c05320 at 529.454 kb on + strand, within PGA1_c05320 at 529.457 kb on - strand, within PGA1_c05320 at 529.598 kb on + strand, within PGA1_c05320 at 529.606 kb on - strand, within PGA1_c05320 at 529.688 kb on - strand, within PGA1_c05320 at 529.688 kb on - strand, within PGA1_c05320 at 529.693 kb on + strand, within PGA1_c05320 at 529.712 kb on + strand, within PGA1_c05320 at 529.720 kb on - strand, within PGA1_c05320 at 529.722 kb on + strand, within PGA1_c05320 at 529.836 kb on + strand, within PGA1_c05320 at 529.836 kb on + strand, within PGA1_c05320 at 529.903 kb on - strand, within PGA1_c05320 at 529.919 kb on + strand, within PGA1_c05320 at 529.944 kb on + strand, within PGA1_c05320 at 529.952 kb on - strand, within PGA1_c05320 at 530.061 kb on + strand, within PGA1_c05320 at 530.083 kb on + strand, within PGA1_c05320 at 530.083 kb on + strand, within PGA1_c05320 at 530.083 kb on + strand, within PGA1_c05320 at 530.091 kb on - strand, within PGA1_c05320 at 530.091 kb on - strand, within PGA1_c05320 at 530.113 kb on - strand, within PGA1_c05320 at 530.113 kb on - strand, within PGA1_c05320 at 530.113 kb on - strand, within PGA1_c05320 at 530.113 kb on - strand, within PGA1_c05320 at 530.113 kb on - strand, within PGA1_c05320 at 530.113 kb on - strand, within PGA1_c05320 at 530.120 kb on + strand, within PGA1_c05320 at 530.120 kb on + strand, within PGA1_c05320 at 530.120 kb on + strand, within PGA1_c05320 at 530.128 kb on - strand, within PGA1_c05320 at 530.128 kb on - strand, within PGA1_c05320 at 530.143 kb on + strand, within PGA1_c05320 at 530.183 kb on - strand, within PGA1_c05320 at 530.268 kb on - strand, within PGA1_c05320 at 530.273 kb on - strand, within PGA1_c05320 at 530.273 kb on - strand, within PGA1_c05320 at 530.283 kb on - strand, within PGA1_c05320 at 530.477 kb on + strand, within PGA1_c05320 at 530.559 kb on + strand, within PGA1_c05320 at 530.562 kb on - strand, within PGA1_c05320 at 530.570 kb on + strand, within PGA1_c05320 at 530.578 kb on - strand, within PGA1_c05320 at 530.578 kb on - strand, within PGA1_c05320 at 530.589 kb on + strand, within PGA1_c05320 at 530.597 kb on - strand, within PGA1_c05320 at 530.600 kb on + strand, within PGA1_c05320 at 530.688 kb on - strand, within PGA1_c05320 at 530.747 kb on - strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.763 kb on + strand, within PGA1_c05320 at 530.763 kb on + strand, within PGA1_c05320 at 530.767 kb on + strand, within PGA1_c05320 at 530.814 kb on + strand, within PGA1_c05320 at 530.843 kb on + strand, within PGA1_c05320 at 530.942 kb on + strand at 530.942 kb on + strand at 530.947 kb on + strand at 530.950 kb on - strand at 530.952 kb on + strand at 530.960 kb on - strand at 530.960 kb on - strand at 530.967 kb on + strand at 531.027 kb on - strand at 531.030 kb on + strand at 531.037 kb on + strand at 531.066 kb on + strand at 531.124 kb on + strand at 531.168 kb on - strand at 531.168 kb on - strand at 531.214 kb on - strand at 531.228 kb on + strand at 531.309 kb on + strand, within PGA1_c05330 at 531.420 kb on + strand, within PGA1_c05330 at 531.428 kb on - strand, within PGA1_c05330 at 531.445 kb on + strand, within PGA1_c05330 at 531.571 kb on + strand, within PGA1_c05330 at 531.582 kb on - strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.638 kb on + strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.646 kb on - strand, within PGA1_c05330 at 531.721 kb on + strand, within PGA1_c05330 at 531.736 kb on + strand, within PGA1_c05330 at 531.801 kb on + strand, within PGA1_c05330 at 531.840 kb on - strand, within PGA1_c05330 at 531.902 kb on + strand, within PGA1_c05330 at 531.931 kb on - strand, within PGA1_c05330 at 531.960 kb on + strand at 531.982 kb on - strand at 532.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM remove 527,578 - PGA1_c05300 0.88 +0.8 527,590 + PGA1_c05300 0.89 +0.2 527,618 - +1.2 527,636 + +0.7 527,686 + +0.3 527,729 + +1.0 527,731 + +0.7 527,827 - PGA1_c05310 0.11 +0.1 527,850 - PGA1_c05310 0.13 +0.0 527,862 - PGA1_c05310 0.15 +0.2 527,866 + PGA1_c05310 0.15 +0.7 527,876 + PGA1_c05310 0.16 -0.1 527,891 + PGA1_c05310 0.18 +0.4 527,953 + PGA1_c05310 0.26 +0.7 528,030 + PGA1_c05310 0.35 +0.6 528,085 - PGA1_c05310 0.41 +0.7 528,096 + PGA1_c05310 0.42 +1.1 528,122 + PGA1_c05310 0.46 +0.8 528,132 - PGA1_c05310 0.47 +0.2 528,132 - PGA1_c05310 0.47 +1.8 528,146 + PGA1_c05310 0.48 -0.4 528,156 + PGA1_c05310 0.50 -1.2 528,159 - PGA1_c05310 0.50 +1.8 528,164 - PGA1_c05310 0.51 -0.9 528,172 + PGA1_c05310 0.51 -0.9 528,177 - PGA1_c05310 0.52 -0.7 528,198 + PGA1_c05310 0.55 +0.2 528,240 + PGA1_c05310 0.60 +0.4 528,240 - PGA1_c05310 0.60 -1.3 528,252 + PGA1_c05310 0.61 +1.4 528,252 + PGA1_c05310 0.61 +0.0 528,257 + PGA1_c05310 0.62 +0.7 528,260 - PGA1_c05310 0.62 -1.1 528,260 - PGA1_c05310 0.62 -0.2 528,260 - PGA1_c05310 0.62 +0.5 528,313 - PGA1_c05310 0.68 +0.7 528,313 - PGA1_c05310 0.68 +0.4 528,363 + PGA1_c05310 0.74 +1.2 528,363 + PGA1_c05310 0.74 -1.1 528,363 + PGA1_c05310 0.74 -0.4 528,363 + PGA1_c05310 0.74 +1.2 528,371 - PGA1_c05310 0.75 +0.2 528,371 - PGA1_c05310 0.75 +0.5 528,371 - PGA1_c05310 0.75 +1.4 528,382 + PGA1_c05310 0.76 +0.3 528,390 + PGA1_c05310 0.77 +0.7 528,424 + PGA1_c05310 0.81 +0.2 528,441 + PGA1_c05310 0.83 +2.0 528,522 + +1.5 528,545 - -0.4 528,637 + -1.1 528,637 + +0.9 528,669 - +0.1 528,688 - +0.4 528,692 + +0.7 528,702 + +0.5 528,710 - -0.1 528,710 - +1.2 528,725 + +0.7 528,725 + -0.6 528,791 - -0.6 528,804 + -0.1 528,854 - PGA1_c05320 0.11 +0.5 528,884 + PGA1_c05320 0.12 +1.7 528,888 + PGA1_c05320 0.12 +1.2 528,892 - PGA1_c05320 0.12 +2.2 528,951 + PGA1_c05320 0.15 +0.6 528,996 + PGA1_c05320 0.16 +0.9 529,011 - PGA1_c05320 0.17 -0.9 529,021 + PGA1_c05320 0.17 +0.9 529,028 + PGA1_c05320 0.18 +0.2 529,028 + PGA1_c05320 0.18 +0.6 529,028 + PGA1_c05320 0.18 -1.5 529,036 - PGA1_c05320 0.18 -0.3 529,126 - PGA1_c05320 0.21 +0.5 529,171 - PGA1_c05320 0.23 -0.1 529,171 - PGA1_c05320 0.23 +0.4 529,245 - PGA1_c05320 0.26 +0.0 529,295 + PGA1_c05320 0.28 -0.9 529,295 + PGA1_c05320 0.28 -1.7 529,295 + PGA1_c05320 0.28 +1.2 529,298 - PGA1_c05320 0.28 -0.3 529,303 - PGA1_c05320 0.28 +0.4 529,303 - PGA1_c05320 0.28 -2.1 529,336 - PGA1_c05320 0.30 -0.2 529,336 - PGA1_c05320 0.30 +1.2 529,385 + PGA1_c05320 0.31 +0.2 529,439 - PGA1_c05320 0.34 -0.9 529,454 + PGA1_c05320 0.34 +1.0 529,457 - PGA1_c05320 0.34 +1.4 529,598 + PGA1_c05320 0.40 -0.7 529,606 - PGA1_c05320 0.40 -0.5 529,688 - PGA1_c05320 0.43 -0.0 529,688 - PGA1_c05320 0.43 +0.7 529,693 + PGA1_c05320 0.43 -0.1 529,712 + PGA1_c05320 0.44 +0.5 529,720 - PGA1_c05320 0.44 -1.2 529,722 + PGA1_c05320 0.45 -0.0 529,836 + PGA1_c05320 0.49 +1.1 529,836 + PGA1_c05320 0.49 +0.8 529,903 - PGA1_c05320 0.52 +0.9 529,919 + PGA1_c05320 0.52 +1.7 529,944 + PGA1_c05320 0.53 +0.1 529,952 - PGA1_c05320 0.53 +0.4 530,061 + PGA1_c05320 0.58 +0.2 530,083 + PGA1_c05320 0.59 +1.2 530,083 + PGA1_c05320 0.59 +0.9 530,083 + PGA1_c05320 0.59 -0.1 530,091 - PGA1_c05320 0.59 +0.4 530,091 - PGA1_c05320 0.59 +0.2 530,113 - PGA1_c05320 0.60 +1.0 530,113 - PGA1_c05320 0.60 -0.1 530,113 - PGA1_c05320 0.60 +0.8 530,113 - PGA1_c05320 0.60 +0.0 530,113 - PGA1_c05320 0.60 +0.4 530,113 - PGA1_c05320 0.60 +0.5 530,120 + PGA1_c05320 0.60 +2.7 530,120 + PGA1_c05320 0.60 -1.6 530,120 + PGA1_c05320 0.60 +0.9 530,128 - PGA1_c05320 0.60 +2.0 530,128 - PGA1_c05320 0.60 -0.2 530,143 + PGA1_c05320 0.61 -0.5 530,183 - PGA1_c05320 0.62 +0.5 530,268 - PGA1_c05320 0.66 +0.7 530,273 - PGA1_c05320 0.66 -0.5 530,273 - PGA1_c05320 0.66 -0.9 530,283 - PGA1_c05320 0.66 +0.2 530,477 + PGA1_c05320 0.74 +0.3 530,559 + PGA1_c05320 0.77 -0.8 530,562 - PGA1_c05320 0.77 +0.1 530,570 + PGA1_c05320 0.78 +0.7 530,578 - PGA1_c05320 0.78 +1.7 530,578 - PGA1_c05320 0.78 +0.1 530,589 + PGA1_c05320 0.78 -0.9 530,597 - PGA1_c05320 0.79 -0.5 530,600 + PGA1_c05320 0.79 +0.1 530,688 - PGA1_c05320 0.82 +0.1 530,747 - PGA1_c05320 0.84 +0.8 530,758 + PGA1_c05320 0.85 -0.8 530,758 + PGA1_c05320 0.85 -0.0 530,758 + PGA1_c05320 0.85 -0.5 530,763 + PGA1_c05320 0.85 +0.1 530,763 + PGA1_c05320 0.85 -1.5 530,767 + PGA1_c05320 0.85 -0.8 530,814 + PGA1_c05320 0.87 +1.1 530,843 + PGA1_c05320 0.88 -1.7 530,942 + +0.3 530,942 + +0.8 530,947 + +1.1 530,950 - +0.4 530,952 + -0.3 530,960 - -0.3 530,960 - -0.9 530,967 + -0.8 531,027 - +0.1 531,030 + +0.0 531,037 + +0.1 531,066 + +0.8 531,124 + -0.8 531,168 - +0.3 531,168 - +0.7 531,214 - -0.2 531,228 + +1.0 531,309 + PGA1_c05330 0.18 -0.1 531,420 + PGA1_c05330 0.31 -0.7 531,428 - PGA1_c05330 0.31 -0.6 531,445 + PGA1_c05330 0.33 -0.1 531,571 + PGA1_c05330 0.47 -1.6 531,582 - PGA1_c05330 0.49 +0.3 531,633 + PGA1_c05330 0.54 -0.9 531,633 + PGA1_c05330 0.54 -0.4 531,638 + PGA1_c05330 0.55 -1.2 531,641 - PGA1_c05330 0.55 +0.2 531,641 - PGA1_c05330 0.55 +0.7 531,646 - PGA1_c05330 0.56 -0.3 531,721 + PGA1_c05330 0.64 -0.5 531,736 + PGA1_c05330 0.66 +0.3 531,801 + PGA1_c05330 0.73 +0.7 531,840 - PGA1_c05330 0.77 -2.2 531,902 + PGA1_c05330 0.84 -1.3 531,931 - PGA1_c05330 0.87 -0.2 531,960 + +1.3 531,982 - -2.7 532,017 - -2.7
Or see this region's nucleotide sequence