Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05280

Experiment: m.b. Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05270 and PGA1_c05280 are separated by 72 nucleotidesPGA1_c05280 and PGA1_c05290 are separated by 33 nucleotides PGA1_c05270: PGA1_c05270 - ATPases involved in chromosome partitioning, at 522,527 to 523,600 _c05270 PGA1_c05280: PGA1_c05280 - hypothetical protein, at 523,673 to 524,959 _c05280 PGA1_c05290: PGA1_c05290 - polysaccharide biosynthesis protein ExoT-like protein, at 524,993 to 526,357 _c05290 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 522.859 kb on + strand, within PGA1_c05270at 522.867 kb on - strand, within PGA1_c05270at 522.907 kb on + strand, within PGA1_c05270at 522.907 kb on + strand, within PGA1_c05270at 522.954 kb on - strand, within PGA1_c05270at 522.960 kb on - strand, within PGA1_c05270at 522.961 kb on + strand, within PGA1_c05270at 522.987 kb on + strand, within PGA1_c05270at 522.987 kb on + strand, within PGA1_c05270at 523.029 kb on + strand, within PGA1_c05270at 523.029 kb on + strand, within PGA1_c05270at 523.029 kb on + strand, within PGA1_c05270at 523.037 kb on + strand, within PGA1_c05270at 523.037 kb on - strand, within PGA1_c05270at 523.037 kb on - strand, within PGA1_c05270at 523.037 kb on - strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.148 kb on + strand, within PGA1_c05270at 523.156 kb on - strand, within PGA1_c05270at 523.156 kb on - strand, within PGA1_c05270at 523.251 kb on - strand, within PGA1_c05270at 523.256 kb on + strand, within PGA1_c05270at 523.264 kb on - strand, within PGA1_c05270at 523.344 kb on + strand, within PGA1_c05270at 523.363 kb on - strand, within PGA1_c05270at 523.367 kb on + strand, within PGA1_c05270at 523.370 kb on - strand, within PGA1_c05270at 523.377 kb on - strand, within PGA1_c05270at 523.458 kb on + strand, within PGA1_c05270at 523.458 kb on - strand, within PGA1_c05270at 523.460 kb on + strand, within PGA1_c05270at 523.501 kb on - strandat 523.537 kb on - strandat 523.548 kb on + strandat 523.572 kb on + strandat 523.572 kb on + strandat 523.577 kb on + strandat 523.580 kb on - strandat 523.612 kb on + strandat 523.614 kb on + strandat 523.619 kb on + strandat 523.664 kb on + strandat 523.676 kb on + strandat 523.681 kb on + strandat 523.689 kb on - strandat 523.707 kb on - strandat 523.743 kb on - strandat 523.750 kb on + strandat 523.814 kb on + strand, within PGA1_c05280at 523.852 kb on + strand, within PGA1_c05280at 523.887 kb on + strand, within PGA1_c05280at 523.887 kb on + strand, within PGA1_c05280at 523.895 kb on - strand, within PGA1_c05280at 523.936 kb on - strand, within PGA1_c05280at 523.957 kb on + strand, within PGA1_c05280at 523.957 kb on + strand, within PGA1_c05280at 523.974 kb on + strand, within PGA1_c05280at 523.986 kb on - strand, within PGA1_c05280at 524.113 kb on + strand, within PGA1_c05280at 524.192 kb on + strand, within PGA1_c05280at 524.192 kb on + strand, within PGA1_c05280at 524.193 kb on + strand, within PGA1_c05280at 524.200 kb on - strand, within PGA1_c05280at 524.220 kb on - strand, within PGA1_c05280at 524.235 kb on + strand, within PGA1_c05280at 524.246 kb on - strand, within PGA1_c05280at 524.288 kb on + strand, within PGA1_c05280at 524.288 kb on + strand, within PGA1_c05280at 524.309 kb on - strand, within PGA1_c05280at 524.347 kb on + strand, within PGA1_c05280at 524.355 kb on - strand, within PGA1_c05280at 524.355 kb on - strand, within PGA1_c05280at 524.400 kb on + strand, within PGA1_c05280at 524.400 kb on + strand, within PGA1_c05280at 524.410 kb on + strand, within PGA1_c05280at 524.436 kb on - strand, within PGA1_c05280at 524.463 kb on + strand, within PGA1_c05280at 524.464 kb on + strand, within PGA1_c05280at 524.571 kb on - strand, within PGA1_c05280at 524.578 kb on + strand, within PGA1_c05280at 524.578 kb on + strand, within PGA1_c05280at 524.730 kb on - strand, within PGA1_c05280at 524.762 kb on + strand, within PGA1_c05280at 524.811 kb on + strand, within PGA1_c05280at 524.819 kb on - strand, within PGA1_c05280at 524.867 kb on + strandat 524.867 kb on + strandat 524.875 kb on - strandat 524.935 kb on + strandat 524.940 kb on + strandat 524.974 kb on + strandat 524.982 kb on - strandat 524.997 kb on - strandat 524.997 kb on - strandat 525.060 kb on - strandat 525.083 kb on - strandat 525.151 kb on - strand, within PGA1_c05290at 525.151 kb on - strand, within PGA1_c05290at 525.190 kb on - strand, within PGA1_c05290at 525.221 kb on + strand, within PGA1_c05290at 525.269 kb on + strand, within PGA1_c05290at 525.269 kb on + strand, within PGA1_c05290at 525.300 kb on - strand, within PGA1_c05290at 525.307 kb on - strand, within PGA1_c05290at 525.343 kb on + strand, within PGA1_c05290at 525.346 kb on + strand, within PGA1_c05290at 525.346 kb on + strand, within PGA1_c05290at 525.356 kb on + strand, within PGA1_c05290at 525.375 kb on + strand, within PGA1_c05290at 525.383 kb on - strand, within PGA1_c05290at 525.394 kb on + strand, within PGA1_c05290at 525.408 kb on - strand, within PGA1_c05290at 525.448 kb on + strand, within PGA1_c05290at 525.471 kb on - strand, within PGA1_c05290at 525.479 kb on + strand, within PGA1_c05290at 525.479 kb on + strand, within PGA1_c05290at 525.481 kb on + strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.487 kb on - strand, within PGA1_c05290at 525.496 kb on + strand, within PGA1_c05290at 525.501 kb on + strand, within PGA1_c05290at 525.501 kb on + strand, within PGA1_c05290at 525.501 kb on + strand, within PGA1_c05290at 525.503 kb on - strand, within PGA1_c05290at 525.509 kb on - strand, within PGA1_c05290at 525.541 kb on + strand, within PGA1_c05290at 525.548 kb on + strand, within PGA1_c05290at 525.549 kb on - strand, within PGA1_c05290at 525.556 kb on - strand, within PGA1_c05290at 525.596 kb on + strand, within PGA1_c05290at 525.613 kb on + strand, within PGA1_c05290at 525.626 kb on - strand, within PGA1_c05290at 525.628 kb on + strand, within PGA1_c05290at 525.674 kb on - strand, within PGA1_c05290at 525.712 kb on - strand, within PGA1_c05290at 525.754 kb on + strand, within PGA1_c05290at 525.762 kb on - strand, within PGA1_c05290at 525.796 kb on - strand, within PGA1_c05290at 525.798 kb on - strand, within PGA1_c05290at 525.836 kb on + strand, within PGA1_c05290at 525.844 kb on - strand, within PGA1_c05290at 525.888 kb on - strand, within PGA1_c05290at 525.924 kb on + strand, within PGA1_c05290at 525.940 kb on + strand, within PGA1_c05290at 525.943 kb on - strand, within PGA1_c05290at 525.953 kb on - strand, within PGA1_c05290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 1.25 mM
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522,859 + PGA1_c05270 0.31 +0.5
522,867 - PGA1_c05270 0.32 +0.7
522,907 + PGA1_c05270 0.35 -0.9
522,907 + PGA1_c05270 0.35 +1.2
522,954 - PGA1_c05270 0.40 +0.1
522,960 - PGA1_c05270 0.40 +2.1
522,961 + PGA1_c05270 0.40 +0.1
522,987 + PGA1_c05270 0.43 +0.2
522,987 + PGA1_c05270 0.43 +0.1
523,029 + PGA1_c05270 0.47 +0.7
523,029 + PGA1_c05270 0.47 +1.2
523,029 + PGA1_c05270 0.47 +2.1
523,037 + PGA1_c05270 0.47 +0.4
523,037 - PGA1_c05270 0.47 +0.9
523,037 - PGA1_c05270 0.47 +0.1
523,037 - PGA1_c05270 0.47 +0.1
523,148 + PGA1_c05270 0.58 +1.1
523,148 + PGA1_c05270 0.58 +0.2
523,148 + PGA1_c05270 0.58 +1.2
523,148 + PGA1_c05270 0.58 -1.0
523,156 - PGA1_c05270 0.59 +0.4
523,156 - PGA1_c05270 0.59 +0.4
523,251 - PGA1_c05270 0.67 +0.4
523,256 + PGA1_c05270 0.68 +0.4
523,264 - PGA1_c05270 0.69 -0.7
523,344 + PGA1_c05270 0.76 -0.1
523,363 - PGA1_c05270 0.78 +0.3
523,367 + PGA1_c05270 0.78 +0.1
523,370 - PGA1_c05270 0.78 -0.3
523,377 - PGA1_c05270 0.79 -0.2
523,458 + PGA1_c05270 0.87 +0.6
523,458 - PGA1_c05270 0.87 -0.7
523,460 + PGA1_c05270 0.87 +1.4
523,501 - +0.1
523,537 - +0.7
523,548 + +0.3
523,572 + -0.3
523,572 + +1.0
523,577 + -0.1
523,580 - +0.5
523,612 + -0.4
523,614 + +1.0
523,619 + +0.9
523,664 + -0.2
523,676 + +1.0
523,681 + +0.7
523,689 - -0.3
523,707 - +0.5
523,743 - +0.0
523,750 + -0.3
523,814 + PGA1_c05280 0.11 +0.9
523,852 + PGA1_c05280 0.14 +0.7
523,887 + PGA1_c05280 0.17 +1.1
523,887 + PGA1_c05280 0.17 +1.2
523,895 - PGA1_c05280 0.17 +0.6
523,936 - PGA1_c05280 0.20 +0.4
523,957 + PGA1_c05280 0.22 +0.1
523,957 + PGA1_c05280 0.22 +0.4
523,974 + PGA1_c05280 0.23 -1.7
523,986 - PGA1_c05280 0.24 +0.9
524,113 + PGA1_c05280 0.34 +0.9
524,192 + PGA1_c05280 0.40 +0.4
524,192 + PGA1_c05280 0.40 +0.8
524,193 + PGA1_c05280 0.40 +0.0
524,200 - PGA1_c05280 0.41 +0.9
524,220 - PGA1_c05280 0.43 +0.9
524,235 + PGA1_c05280 0.44 +1.4
524,246 - PGA1_c05280 0.45 +0.1
524,288 + PGA1_c05280 0.48 +0.7
524,288 + PGA1_c05280 0.48 +0.7
524,309 - PGA1_c05280 0.49 +1.2
524,347 + PGA1_c05280 0.52 -0.0
524,355 - PGA1_c05280 0.53 -1.3
524,355 - PGA1_c05280 0.53 +0.0
524,400 + PGA1_c05280 0.56 +1.1
524,400 + PGA1_c05280 0.56 -0.5
524,410 + PGA1_c05280 0.57 -2.3
524,436 - PGA1_c05280 0.59 -1.3
524,463 + PGA1_c05280 0.61 +0.1
524,464 + PGA1_c05280 0.61 -0.5
524,571 - PGA1_c05280 0.70 +0.5
524,578 + PGA1_c05280 0.70 +0.2
524,578 + PGA1_c05280 0.70 +0.9
524,730 - PGA1_c05280 0.82 -0.4
524,762 + PGA1_c05280 0.85 +1.1
524,811 + PGA1_c05280 0.88 -0.3
524,819 - PGA1_c05280 0.89 +0.2
524,867 + +0.9
524,867 + -0.7
524,875 - +1.2
524,935 + +0.6
524,940 + -0.8
524,974 + +0.3
524,982 - -1.7
524,997 - -0.1
524,997 - -0.0
525,060 - +0.7
525,083 - +0.3
525,151 - PGA1_c05290 0.12 -0.6
525,151 - PGA1_c05290 0.12 +0.7
525,190 - PGA1_c05290 0.14 +0.9
525,221 + PGA1_c05290 0.17 +0.7
525,269 + PGA1_c05290 0.20 -0.2
525,269 + PGA1_c05290 0.20 +0.3
525,300 - PGA1_c05290 0.22 +1.3
525,307 - PGA1_c05290 0.23 -0.7
525,343 + PGA1_c05290 0.26 -0.3
525,346 + PGA1_c05290 0.26 -0.3
525,346 + PGA1_c05290 0.26 +0.7
525,356 + PGA1_c05290 0.27 +0.3
525,375 + PGA1_c05290 0.28 +1.1
525,383 - PGA1_c05290 0.29 -0.3
525,394 + PGA1_c05290 0.29 -1.3
525,408 - PGA1_c05290 0.30 +1.5
525,448 + PGA1_c05290 0.33 -0.3
525,471 - PGA1_c05290 0.35 +0.2
525,479 + PGA1_c05290 0.36 -0.0
525,479 + PGA1_c05290 0.36 +0.7
525,481 + PGA1_c05290 0.36 -0.5
525,487 - PGA1_c05290 0.36 +0.5
525,487 - PGA1_c05290 0.36 +0.3
525,487 - PGA1_c05290 0.36 +0.2
525,487 - PGA1_c05290 0.36 +0.7
525,487 - PGA1_c05290 0.36 +0.8
525,496 + PGA1_c05290 0.37 +0.8
525,501 + PGA1_c05290 0.37 +0.1
525,501 + PGA1_c05290 0.37 +0.5
525,501 + PGA1_c05290 0.37 -0.3
525,503 - PGA1_c05290 0.37 +0.8
525,509 - PGA1_c05290 0.38 -0.3
525,541 + PGA1_c05290 0.40 +0.7
525,548 + PGA1_c05290 0.41 -1.8
525,549 - PGA1_c05290 0.41 -0.6
525,556 - PGA1_c05290 0.41 -0.8
525,596 + PGA1_c05290 0.44 -1.9
525,613 + PGA1_c05290 0.45 +0.2
525,626 - PGA1_c05290 0.46 +0.1
525,628 + PGA1_c05290 0.47 +1.1
525,674 - PGA1_c05290 0.50 -0.3
525,712 - PGA1_c05290 0.53 +1.0
525,754 + PGA1_c05290 0.56 -0.5
525,762 - PGA1_c05290 0.56 +0.8
525,796 - PGA1_c05290 0.59 +1.5
525,798 - PGA1_c05290 0.59 +0.7
525,836 + PGA1_c05290 0.62 -1.7
525,844 - PGA1_c05290 0.62 +1.2
525,888 - PGA1_c05290 0.66 +1.4
525,924 + PGA1_c05290 0.68 -0.0
525,940 + PGA1_c05290 0.69 +0.4
525,943 - PGA1_c05290 0.70 +2.1
525,953 - PGA1_c05290 0.70 +0.8

Or see this region's nucleotide sequence