Strain Fitness in Marinobacter adhaerens HP15 around HP15_349

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_347 and HP15_348 are separated by 15 nucleotidesHP15_348 and HP15_349 overlap by 4 nucleotidesHP15_349 and HP15_350 are separated by 146 nucleotidesHP15_350 and HP15_351 are separated by 3 nucleotides HP15_347: HP15_347 - glutamate-1-semialdehyde 2,1-aminomutase, at 342,046 to 343,326 _347 HP15_348: HP15_348 - thiamine-phosphate pyrophosphorylase, at 343,342 to 344,001 _348 HP15_349: HP15_349 - phosphomethylpyrimidine kinase, at 343,998 to 344,651 _349 HP15_350: HP15_350 - conserved hypothetical protein CHP00701, at 344,798 to 345,220 _350 HP15_351: HP15_351 - Cl-channel, voltage-gated family protein, at 345,224 to 346,999 _351 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1at 345.361 kb on + strandat 345.367 kb on + strandat 345.404 kb on + strand, within HP15_351at 345.512 kb on - strand, within HP15_351at 345.580 kb on - strand, within HP15_351

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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345,361 + -1.1
345,367 + -2.4
345,404 + HP15_351 0.10 -0.4
345,512 - HP15_351 0.16 -0.1
345,580 - HP15_351 0.20 -1.8

Or see this region's nucleotide sequence