Strain Fitness in Marinobacter adhaerens HP15 around HP15_2692

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2691 and HP15_2692 are separated by 261 nucleotidesHP15_2692 and HP15_2693 are separated by 3 nucleotides HP15_2691: HP15_2691 - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily, at 2,843,338 to 2,844,060 _2691 HP15_2692: HP15_2692 - phenylacetate degradation probable enoyl-CoA hydratase paaB, at 2,844,322 to 2,845,113 _2692 HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data), at 2,845,117 to 2,846,637 _2693 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -2 -1 0 1at 2843.386 kb on + strandat 2843.410 kb on - strandat 2843.468 kb on + strand, within HP15_2691at 2843.558 kb on + strand, within HP15_2691at 2843.561 kb on - strand, within HP15_2691at 2843.566 kb on - strand, within HP15_2691at 2843.690 kb on - strand, within HP15_2691at 2843.753 kb on + strand, within HP15_2691at 2843.758 kb on + strand, within HP15_2691at 2843.885 kb on + strand, within HP15_2691at 2843.915 kb on - strand, within HP15_2691at 2843.947 kb on - strand, within HP15_2691at 2843.972 kb on + strand, within HP15_2691at 2844.152 kb on + strandat 2844.305 kb on + strandat 2844.357 kb on + strandat 2844.365 kb on - strandat 2844.365 kb on - strandat 2844.373 kb on + strandat 2844.374 kb on + strandat 2844.446 kb on - strand, within HP15_2692at 2844.464 kb on - strand, within HP15_2692at 2844.524 kb on - strand, within HP15_2692at 2844.599 kb on + strand, within HP15_2692at 2844.626 kb on - strand, within HP15_2692at 2844.679 kb on - strand, within HP15_2692at 2844.684 kb on - strand, within HP15_2692at 2844.801 kb on + strand, within HP15_2692at 2844.809 kb on - strand, within HP15_2692at 2844.809 kb on - strand, within HP15_2692at 2844.809 kb on - strand, within HP15_2692at 2844.810 kb on - strand, within HP15_2692at 2844.834 kb on - strand, within HP15_2692at 2844.839 kb on - strand, within HP15_2692at 2845.230 kb on + strandat 2845.238 kb on - strandat 2845.413 kb on + strand, within HP15_2693at 2845.421 kb on - strand, within HP15_2693at 2845.436 kb on + strand, within HP15_2693at 2845.449 kb on + strand, within HP15_2693at 2845.449 kb on + strand, within HP15_2693at 2845.454 kb on - strand, within HP15_2693at 2845.457 kb on - strand, within HP15_2693at 2845.613 kb on - strand, within HP15_2693at 2845.693 kb on - strand, within HP15_2693at 2845.746 kb on - strand, within HP15_2693at 2845.792 kb on + strand, within HP15_2693at 2845.863 kb on - strand, within HP15_2693at 2845.882 kb on + strand, within HP15_2693at 2845.973 kb on - strand, within HP15_2693at 2846.001 kb on + strand, within HP15_2693at 2846.009 kb on - strand, within HP15_2693at 2846.032 kb on - strand, within HP15_2693at 2846.057 kb on + strand, within HP15_2693at 2846.088 kb on + strand, within HP15_2693

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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2,843,386 + -0.5
2,843,410 - +1.0
2,843,468 + HP15_2691 0.18 +0.1
2,843,558 + HP15_2691 0.30 -0.7
2,843,561 - HP15_2691 0.31 -0.0
2,843,566 - HP15_2691 0.32 -0.5
2,843,690 - HP15_2691 0.49 +0.2
2,843,753 + HP15_2691 0.57 +0.2
2,843,758 + HP15_2691 0.58 +0.6
2,843,885 + HP15_2691 0.76 +0.3
2,843,915 - HP15_2691 0.80 -0.6
2,843,947 - HP15_2691 0.84 +0.1
2,843,972 + HP15_2691 0.88 -0.2
2,844,152 + -0.5
2,844,305 + -0.1
2,844,357 + -1.5
2,844,365 - +0.0
2,844,365 - -1.6
2,844,373 + +0.9
2,844,374 + -1.8
2,844,446 - HP15_2692 0.16 -1.0
2,844,464 - HP15_2692 0.18 -1.0
2,844,524 - HP15_2692 0.26 -1.5
2,844,599 + HP15_2692 0.35 -0.2
2,844,626 - HP15_2692 0.38 -0.5
2,844,679 - HP15_2692 0.45 -0.4
2,844,684 - HP15_2692 0.46 +0.0
2,844,801 + HP15_2692 0.60 -1.7
2,844,809 - HP15_2692 0.61 -0.5
2,844,809 - HP15_2692 0.61 +0.3
2,844,809 - HP15_2692 0.61 -2.0
2,844,810 - HP15_2692 0.62 -1.5
2,844,834 - HP15_2692 0.65 -0.0
2,844,839 - HP15_2692 0.65 -0.4
2,845,230 + +0.1
2,845,238 - +0.0
2,845,413 + HP15_2693 0.19 +0.2
2,845,421 - HP15_2693 0.20 -0.5
2,845,436 + HP15_2693 0.21 -1.5
2,845,449 + HP15_2693 0.22 +1.1
2,845,449 + HP15_2693 0.22 +0.4
2,845,454 - HP15_2693 0.22 +0.3
2,845,457 - HP15_2693 0.22 -0.4
2,845,613 - HP15_2693 0.33 +0.8
2,845,693 - HP15_2693 0.38 -0.0
2,845,746 - HP15_2693 0.41 +0.4
2,845,792 + HP15_2693 0.44 -0.5
2,845,863 - HP15_2693 0.49 -0.7
2,845,882 + HP15_2693 0.50 +0.0
2,845,973 - HP15_2693 0.56 +0.5
2,846,001 + HP15_2693 0.58 +0.6
2,846,009 - HP15_2693 0.59 +0.3
2,846,032 - HP15_2693 0.60 +0.7
2,846,057 + HP15_2693 0.62 -0.2
2,846,088 + HP15_2693 0.64 -0.7

Or see this region's nucleotide sequence