Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2691 and HP15_2692 are separated by 261 nucleotides HP15_2692 and HP15_2693 are separated by 3 nucleotides
HP15_2691: HP15_2691 - carbonic anhydrase/acetyltransferase, isoleucine patch superfamily, at 2,843,338 to 2,844,060
_2691
HP15_2692: HP15_2692 - phenylacetate degradation probable enoyl-CoA hydratase paaB, at 2,844,322 to 2,845,113
_2692
HP15_2693: HP15_2693 - 3-hydroxyacyl-CoA dehydrogenase PaaC (EC 1.1.1.-) (from data) , at 2,845,117 to 2,846,637
_2693
Position (kb)
2844
2845
2846 Strain fitness (log2 ratio)
-2
-1
0
1 at 2843.386 kb on + strand at 2843.410 kb on - strand at 2843.468 kb on + strand, within HP15_2691 at 2843.558 kb on + strand, within HP15_2691 at 2843.561 kb on - strand, within HP15_2691 at 2843.566 kb on - strand, within HP15_2691 at 2843.690 kb on - strand, within HP15_2691 at 2843.753 kb on + strand, within HP15_2691 at 2843.758 kb on + strand, within HP15_2691 at 2843.885 kb on + strand, within HP15_2691 at 2843.915 kb on - strand, within HP15_2691 at 2843.947 kb on - strand, within HP15_2691 at 2843.972 kb on + strand, within HP15_2691 at 2844.152 kb on + strand at 2844.305 kb on + strand at 2844.357 kb on + strand at 2844.365 kb on - strand at 2844.365 kb on - strand at 2844.373 kb on + strand at 2844.374 kb on + strand at 2844.446 kb on - strand, within HP15_2692 at 2844.464 kb on - strand, within HP15_2692 at 2844.524 kb on - strand, within HP15_2692 at 2844.599 kb on + strand, within HP15_2692 at 2844.626 kb on - strand, within HP15_2692 at 2844.679 kb on - strand, within HP15_2692 at 2844.684 kb on - strand, within HP15_2692 at 2844.801 kb on + strand, within HP15_2692 at 2844.809 kb on - strand, within HP15_2692 at 2844.809 kb on - strand, within HP15_2692 at 2844.809 kb on - strand, within HP15_2692 at 2844.810 kb on - strand, within HP15_2692 at 2844.834 kb on - strand, within HP15_2692 at 2844.839 kb on - strand, within HP15_2692 at 2845.230 kb on + strand at 2845.238 kb on - strand at 2845.413 kb on + strand, within HP15_2693 at 2845.421 kb on - strand, within HP15_2693 at 2845.436 kb on + strand, within HP15_2693 at 2845.449 kb on + strand, within HP15_2693 at 2845.449 kb on + strand, within HP15_2693 at 2845.454 kb on - strand, within HP15_2693 at 2845.457 kb on - strand, within HP15_2693 at 2845.613 kb on - strand, within HP15_2693 at 2845.693 kb on - strand, within HP15_2693 at 2845.746 kb on - strand, within HP15_2693 at 2845.792 kb on + strand, within HP15_2693 at 2845.863 kb on - strand, within HP15_2693 at 2845.882 kb on + strand, within HP15_2693 at 2845.973 kb on - strand, within HP15_2693 at 2846.001 kb on + strand, within HP15_2693 at 2846.009 kb on - strand, within HP15_2693 at 2846.032 kb on - strand, within HP15_2693 at 2846.057 kb on + strand, within HP15_2693 at 2846.088 kb on + strand, within HP15_2693
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 2,843,386 + -0.5 2,843,410 - +1.0 2,843,468 + HP15_2691 0.18 +0.1 2,843,558 + HP15_2691 0.30 -0.7 2,843,561 - HP15_2691 0.31 -0.0 2,843,566 - HP15_2691 0.32 -0.5 2,843,690 - HP15_2691 0.49 +0.2 2,843,753 + HP15_2691 0.57 +0.2 2,843,758 + HP15_2691 0.58 +0.6 2,843,885 + HP15_2691 0.76 +0.3 2,843,915 - HP15_2691 0.80 -0.6 2,843,947 - HP15_2691 0.84 +0.1 2,843,972 + HP15_2691 0.88 -0.2 2,844,152 + -0.5 2,844,305 + -0.1 2,844,357 + -1.5 2,844,365 - +0.0 2,844,365 - -1.6 2,844,373 + +0.9 2,844,374 + -1.8 2,844,446 - HP15_2692 0.16 -1.0 2,844,464 - HP15_2692 0.18 -1.0 2,844,524 - HP15_2692 0.26 -1.5 2,844,599 + HP15_2692 0.35 -0.2 2,844,626 - HP15_2692 0.38 -0.5 2,844,679 - HP15_2692 0.45 -0.4 2,844,684 - HP15_2692 0.46 +0.0 2,844,801 + HP15_2692 0.60 -1.7 2,844,809 - HP15_2692 0.61 -0.5 2,844,809 - HP15_2692 0.61 +0.3 2,844,809 - HP15_2692 0.61 -2.0 2,844,810 - HP15_2692 0.62 -1.5 2,844,834 - HP15_2692 0.65 -0.0 2,844,839 - HP15_2692 0.65 -0.4 2,845,230 + +0.1 2,845,238 - +0.0 2,845,413 + HP15_2693 0.19 +0.2 2,845,421 - HP15_2693 0.20 -0.5 2,845,436 + HP15_2693 0.21 -1.5 2,845,449 + HP15_2693 0.22 +1.1 2,845,449 + HP15_2693 0.22 +0.4 2,845,454 - HP15_2693 0.22 +0.3 2,845,457 - HP15_2693 0.22 -0.4 2,845,613 - HP15_2693 0.33 +0.8 2,845,693 - HP15_2693 0.38 -0.0 2,845,746 - HP15_2693 0.41 +0.4 2,845,792 + HP15_2693 0.44 -0.5 2,845,863 - HP15_2693 0.49 -0.7 2,845,882 + HP15_2693 0.50 +0.0 2,845,973 - HP15_2693 0.56 +0.5 2,846,001 + HP15_2693 0.58 +0.6 2,846,009 - HP15_2693 0.59 +0.3 2,846,032 - HP15_2693 0.60 +0.7 2,846,057 + HP15_2693 0.62 -0.2 2,846,088 + HP15_2693 0.64 -0.7
Or see this region's nucleotide sequence