Strain Fitness in Marinobacter adhaerens HP15 around HP15_2623

Experiment: casaminos

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2622 and HP15_2623 are separated by 353 nucleotidesHP15_2623 and HP15_2624 are separated by 90 nucleotides HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715 _2622 HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184 _2623 HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687 _2624 Position (kb) 2774 2775 2776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2773.105 kb on + strand, within HP15_2622at 2773.113 kb on - strand, within HP15_2622at 2773.188 kb on + strand, within HP15_2622at 2773.188 kb on + strand, within HP15_2622at 2773.249 kb on + strand, within HP15_2622at 2773.256 kb on - strand, within HP15_2622at 2773.266 kb on - strand, within HP15_2622at 2773.392 kb on - strand, within HP15_2622at 2773.425 kb on - strand, within HP15_2622at 2773.517 kb on - strand, within HP15_2622at 2773.555 kb on - strand, within HP15_2622at 2773.555 kb on - strand, within HP15_2622at 2773.557 kb on + strand, within HP15_2622at 2773.577 kb on + strand, within HP15_2622at 2773.577 kb on + strand, within HP15_2622at 2773.879 kb on - strandat 2773.975 kb on + strandat 2774.006 kb on - strandat 2774.025 kb on - strandat 2774.184 kb on - strand, within HP15_2623at 2774.255 kb on + strand, within HP15_2623at 2774.263 kb on - strand, within HP15_2623at 2774.301 kb on + strand, within HP15_2623at 2774.376 kb on - strand, within HP15_2623at 2774.567 kb on - strand, within HP15_2623at 2774.615 kb on + strand, within HP15_2623at 2774.671 kb on + strand, within HP15_2623at 2774.671 kb on + strand, within HP15_2623at 2774.672 kb on - strand, within HP15_2623at 2774.677 kb on - strand, within HP15_2623at 2774.677 kb on - strand, within HP15_2623at 2774.743 kb on + strand, within HP15_2623at 2774.773 kb on - strand, within HP15_2623at 2774.793 kb on - strand, within HP15_2623at 2774.817 kb on + strand, within HP15_2623at 2774.822 kb on + strand, within HP15_2623at 2774.830 kb on - strand, within HP15_2623at 2774.896 kb on + strand, within HP15_2623at 2774.904 kb on - strand, within HP15_2623at 2774.947 kb on - strand, within HP15_2623at 2774.983 kb on - strand, within HP15_2623at 2775.033 kb on - strand, within HP15_2623at 2775.047 kb on - strand, within HP15_2623at 2775.047 kb on - strand, within HP15_2623at 2775.047 kb on - strand, within HP15_2623at 2775.083 kb on - strandat 2775.152 kb on - strandat 2775.384 kb on + strandat 2775.386 kb on - strandat 2775.408 kb on - strandat 2775.541 kb on - strand, within HP15_2624at 2775.666 kb on + strand, within HP15_2624at 2775.693 kb on + strand, within HP15_2624at 2775.785 kb on + strand, within HP15_2624at 2775.872 kb on - strand, within HP15_2624at 2775.930 kb on - strand, within HP15_2624at 2775.995 kb on - strand, within HP15_2624at 2776.021 kb on - strand, within HP15_2624at 2776.103 kb on - strand, within HP15_2624at 2776.126 kb on + strand, within HP15_2624at 2776.167 kb on + strand, within HP15_2624at 2776.175 kb on - strand, within HP15_2624

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos
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2,773,105 + HP15_2622 0.18 +0.4
2,773,113 - HP15_2622 0.19 -0.2
2,773,188 + HP15_2622 0.29 +0.4
2,773,188 + HP15_2622 0.29 -1.0
2,773,249 + HP15_2622 0.37 -0.3
2,773,256 - HP15_2622 0.38 -0.4
2,773,266 - HP15_2622 0.40 -0.7
2,773,392 - HP15_2622 0.57 +0.0
2,773,425 - HP15_2622 0.61 -0.1
2,773,517 - HP15_2622 0.73 +2.4
2,773,555 - HP15_2622 0.78 -0.1
2,773,555 - HP15_2622 0.78 -0.1
2,773,557 + HP15_2622 0.79 -0.1
2,773,577 + HP15_2622 0.81 -1.2
2,773,577 + HP15_2622 0.81 +0.4
2,773,879 - -0.5
2,773,975 + -0.9
2,774,006 - -1.4
2,774,025 - -0.1
2,774,184 - HP15_2623 0.10 +1.1
2,774,255 + HP15_2623 0.17 -0.3
2,774,263 - HP15_2623 0.17 -0.6
2,774,301 + HP15_2623 0.21 -0.5
2,774,376 - HP15_2623 0.28 -1.2
2,774,567 - HP15_2623 0.45 -1.5
2,774,615 + HP15_2623 0.49 +0.1
2,774,671 + HP15_2623 0.54 -1.0
2,774,671 + HP15_2623 0.54 -0.1
2,774,672 - HP15_2623 0.54 -0.5
2,774,677 - HP15_2623 0.54 -1.2
2,774,677 - HP15_2623 0.54 -0.7
2,774,743 + HP15_2623 0.60 -0.5
2,774,773 - HP15_2623 0.63 -1.7
2,774,793 - HP15_2623 0.65 -0.9
2,774,817 + HP15_2623 0.67 -0.6
2,774,822 + HP15_2623 0.67 -1.3
2,774,830 - HP15_2623 0.68 -1.5
2,774,896 + HP15_2623 0.74 -0.5
2,774,904 - HP15_2623 0.75 -0.1
2,774,947 - HP15_2623 0.79 -0.9
2,774,983 - HP15_2623 0.82 -1.2
2,775,033 - HP15_2623 0.86 -0.9
2,775,047 - HP15_2623 0.88 -0.8
2,775,047 - HP15_2623 0.88 +0.1
2,775,047 - HP15_2623 0.88 -1.4
2,775,083 - -3.8
2,775,152 - -3.3
2,775,384 + -0.5
2,775,386 - +0.5
2,775,408 - -1.0
2,775,541 - HP15_2624 0.19 +0.1
2,775,666 + HP15_2624 0.28 +0.1
2,775,693 + HP15_2624 0.30 +0.0
2,775,785 + HP15_2624 0.36 +1.8
2,775,872 - HP15_2624 0.42 +0.0
2,775,930 - HP15_2624 0.46 -1.2
2,775,995 - HP15_2624 0.51 +0.0
2,776,021 - HP15_2624 0.53 -2.8
2,776,103 - HP15_2624 0.59 +0.3
2,776,126 + HP15_2624 0.60 +0.2
2,776,167 + HP15_2624 0.63 +0.4
2,776,175 - HP15_2624 0.64 -0.0

Or see this region's nucleotide sequence