Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2622 and HP15_2623 are separated by 353 nucleotides HP15_2623 and HP15_2624 are separated by 90 nucleotides
HP15_2622: HP15_2622 - AzlC family protein, at 2,772,969 to 2,773,715
_2622
HP15_2623: HP15_2623 - leucine dehydrogenase, at 2,774,069 to 2,775,184
_2623
HP15_2624: HP15_2624 - sodium-dependent transporter family protein, at 2,775,275 to 2,776,687
_2624
Position (kb)
2774
2775
2776 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2773.105 kb on + strand, within HP15_2622 at 2773.113 kb on - strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.188 kb on + strand, within HP15_2622 at 2773.249 kb on + strand, within HP15_2622 at 2773.256 kb on - strand, within HP15_2622 at 2773.266 kb on - strand, within HP15_2622 at 2773.392 kb on - strand, within HP15_2622 at 2773.425 kb on - strand, within HP15_2622 at 2773.517 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.555 kb on - strand, within HP15_2622 at 2773.557 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.577 kb on + strand, within HP15_2622 at 2773.879 kb on - strand at 2773.975 kb on + strand at 2774.006 kb on - strand at 2774.025 kb on - strand at 2774.184 kb on - strand, within HP15_2623 at 2774.255 kb on + strand, within HP15_2623 at 2774.263 kb on - strand, within HP15_2623 at 2774.301 kb on + strand, within HP15_2623 at 2774.376 kb on - strand, within HP15_2623 at 2774.567 kb on - strand, within HP15_2623 at 2774.615 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.671 kb on + strand, within HP15_2623 at 2774.672 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.677 kb on - strand, within HP15_2623 at 2774.743 kb on + strand, within HP15_2623 at 2774.773 kb on - strand, within HP15_2623 at 2774.793 kb on - strand, within HP15_2623 at 2774.817 kb on + strand, within HP15_2623 at 2774.822 kb on + strand, within HP15_2623 at 2774.830 kb on - strand, within HP15_2623 at 2774.896 kb on + strand, within HP15_2623 at 2774.904 kb on - strand, within HP15_2623 at 2774.947 kb on - strand, within HP15_2623 at 2774.983 kb on - strand, within HP15_2623 at 2775.033 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.047 kb on - strand, within HP15_2623 at 2775.083 kb on - strand at 2775.152 kb on - strand at 2775.384 kb on + strand at 2775.386 kb on - strand at 2775.408 kb on - strand at 2775.541 kb on - strand, within HP15_2624 at 2775.666 kb on + strand, within HP15_2624 at 2775.693 kb on + strand, within HP15_2624 at 2775.785 kb on + strand, within HP15_2624 at 2775.872 kb on - strand, within HP15_2624 at 2775.930 kb on - strand, within HP15_2624 at 2775.995 kb on - strand, within HP15_2624 at 2776.021 kb on - strand, within HP15_2624 at 2776.103 kb on - strand, within HP15_2624 at 2776.126 kb on + strand, within HP15_2624 at 2776.167 kb on + strand, within HP15_2624 at 2776.175 kb on - strand, within HP15_2624
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 2,773,105 + HP15_2622 0.18 +0.4 2,773,113 - HP15_2622 0.19 -0.2 2,773,188 + HP15_2622 0.29 +0.4 2,773,188 + HP15_2622 0.29 -1.0 2,773,249 + HP15_2622 0.37 -0.3 2,773,256 - HP15_2622 0.38 -0.4 2,773,266 - HP15_2622 0.40 -0.7 2,773,392 - HP15_2622 0.57 +0.0 2,773,425 - HP15_2622 0.61 -0.1 2,773,517 - HP15_2622 0.73 +2.4 2,773,555 - HP15_2622 0.78 -0.1 2,773,555 - HP15_2622 0.78 -0.1 2,773,557 + HP15_2622 0.79 -0.1 2,773,577 + HP15_2622 0.81 -1.2 2,773,577 + HP15_2622 0.81 +0.4 2,773,879 - -0.5 2,773,975 + -0.9 2,774,006 - -1.4 2,774,025 - -0.1 2,774,184 - HP15_2623 0.10 +1.1 2,774,255 + HP15_2623 0.17 -0.3 2,774,263 - HP15_2623 0.17 -0.6 2,774,301 + HP15_2623 0.21 -0.5 2,774,376 - HP15_2623 0.28 -1.2 2,774,567 - HP15_2623 0.45 -1.5 2,774,615 + HP15_2623 0.49 +0.1 2,774,671 + HP15_2623 0.54 -1.0 2,774,671 + HP15_2623 0.54 -0.1 2,774,672 - HP15_2623 0.54 -0.5 2,774,677 - HP15_2623 0.54 -1.2 2,774,677 - HP15_2623 0.54 -0.7 2,774,743 + HP15_2623 0.60 -0.5 2,774,773 - HP15_2623 0.63 -1.7 2,774,793 - HP15_2623 0.65 -0.9 2,774,817 + HP15_2623 0.67 -0.6 2,774,822 + HP15_2623 0.67 -1.3 2,774,830 - HP15_2623 0.68 -1.5 2,774,896 + HP15_2623 0.74 -0.5 2,774,904 - HP15_2623 0.75 -0.1 2,774,947 - HP15_2623 0.79 -0.9 2,774,983 - HP15_2623 0.82 -1.2 2,775,033 - HP15_2623 0.86 -0.9 2,775,047 - HP15_2623 0.88 -0.8 2,775,047 - HP15_2623 0.88 +0.1 2,775,047 - HP15_2623 0.88 -1.4 2,775,083 - -3.8 2,775,152 - -3.3 2,775,384 + -0.5 2,775,386 - +0.5 2,775,408 - -1.0 2,775,541 - HP15_2624 0.19 +0.1 2,775,666 + HP15_2624 0.28 +0.1 2,775,693 + HP15_2624 0.30 +0.0 2,775,785 + HP15_2624 0.36 +1.8 2,775,872 - HP15_2624 0.42 +0.0 2,775,930 - HP15_2624 0.46 -1.2 2,775,995 - HP15_2624 0.51 +0.0 2,776,021 - HP15_2624 0.53 -2.8 2,776,103 - HP15_2624 0.59 +0.3 2,776,126 + HP15_2624 0.60 +0.2 2,776,167 + HP15_2624 0.63 +0.4 2,776,175 - HP15_2624 0.64 -0.0
Or see this region's nucleotide sequence