Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1934 and HP15_1935 are separated by 383 nucleotides HP15_1935 and HP15_1936 are separated by 16 nucleotides HP15_1936 and HP15_1937 are separated by 135 nucleotides
HP15_1934: HP15_1934 - periplasmic glucan biosynthesis protein MdoG, at 2,053,108 to 2,054,694
_1934
HP15_1935: HP15_1935 - UTP-glucose-1-phosphate uridylyltransferase, at 2,055,078 to 2,055,914
_1935
HP15_1936: HP15_1936 - conserved hypothetical protein, at 2,055,931 to 2,056,173
_1936
HP15_1937: HP15_1937 - protein containing bacterial bifunctional deaminase-reductase, C-terminal domain, at 2,056,309 to 2,057,181
_1937
Position (kb)
2055
2056 Strain fitness (log2 ratio)
-2
-1
0
1 at 2054.149 kb on + strand, within HP15_1934 at 2054.204 kb on + strand, within HP15_1934 at 2054.382 kb on + strand, within HP15_1934 at 2054.444 kb on + strand, within HP15_1934 at 2054.545 kb on + strand at 2054.643 kb on + strand at 2054.669 kb on + strand at 2054.856 kb on + strand at 2054.864 kb on - strand at 2054.911 kb on + strand at 2056.089 kb on - strand, within HP15_1936 at 2056.275 kb on + strand at 2056.299 kb on - strand at 2056.321 kb on + strand at 2056.321 kb on + strand at 2056.728 kb on - strand, within HP15_1937 at 2056.730 kb on - strand, within HP15_1937 at 2056.772 kb on + strand, within HP15_1937 at 2056.779 kb on + strand, within HP15_1937 at 2056.851 kb on + strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937 at 2056.864 kb on - strand, within HP15_1937
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 2,054,149 + HP15_1934 0.66 +0.0 2,054,204 + HP15_1934 0.69 -0.7 2,054,382 + HP15_1934 0.80 +0.4 2,054,444 + HP15_1934 0.84 +1.4 2,054,545 + -0.5 2,054,643 + -0.7 2,054,669 + -0.1 2,054,856 + -0.1 2,054,864 - +0.0 2,054,911 + +0.4 2,056,089 - HP15_1936 0.65 +0.9 2,056,275 + +0.3 2,056,299 - +0.2 2,056,321 + -0.5 2,056,321 + -0.6 2,056,728 - HP15_1937 0.48 -0.6 2,056,730 - HP15_1937 0.48 +0.0 2,056,772 + HP15_1937 0.53 -0.5 2,056,779 + HP15_1937 0.54 +0.0 2,056,851 + HP15_1937 0.62 -2.2 2,056,864 - HP15_1937 0.64 -0.6 2,056,864 - HP15_1937 0.64 -0.3 2,056,864 - HP15_1937 0.64 -0.3
Or see this region's nucleotide sequence