Strain Fitness in Dechlorosoma suillum PS around Dsui_3520

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3519 and Dsui_3520 are separated by 166 nucleotidesDsui_3520 and Dsui_3521 are separated by 4 nucleotides Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137 _3519 Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411 _3520 Dsui_3521: Dsui_3521 - membrane-fusion protein, at 3,787,416 to 3,788,567 _3521 Position (kb) 3784 3785 3786 3787 3788Strain fitness (log2 ratio) -3 -2 -1 0 1at 3783.332 kb on - strand, within Dsui_3519at 3783.384 kb on - strand, within Dsui_3519at 3783.514 kb on + strand, within Dsui_3519at 3783.522 kb on + strand, within Dsui_3519at 3783.551 kb on - strand, within Dsui_3519at 3783.590 kb on + strand, within Dsui_3519at 3783.612 kb on + strand, within Dsui_3519at 3783.640 kb on + strand, within Dsui_3519at 3783.664 kb on - strand, within Dsui_3519at 3783.752 kb on - strand, within Dsui_3519at 3784.104 kb on + strandat 3784.131 kb on + strandat 3784.188 kb on - strandat 3784.188 kb on - strandat 3784.543 kb on - strandat 3784.562 kb on - strandat 3784.586 kb on + strandat 3784.646 kb on - strand, within Dsui_3520at 3784.745 kb on - strand, within Dsui_3520at 3784.783 kb on - strand, within Dsui_3520at 3784.853 kb on + strand, within Dsui_3520at 3784.894 kb on - strand, within Dsui_3520at 3784.944 kb on - strand, within Dsui_3520at 3784.998 kb on - strand, within Dsui_3520at 3785.052 kb on + strand, within Dsui_3520at 3785.174 kb on + strand, within Dsui_3520at 3785.325 kb on + strand, within Dsui_3520at 3785.333 kb on - strand, within Dsui_3520at 3785.333 kb on - strand, within Dsui_3520at 3785.362 kb on + strand, within Dsui_3520at 3785.450 kb on + strand, within Dsui_3520at 3785.458 kb on + strandat 3785.469 kb on + strand, within Dsui_3520at 3785.572 kb on + strand, within Dsui_3520at 3785.606 kb on - strand, within Dsui_3520at 3785.609 kb on + strand, within Dsui_3520at 3785.710 kb on + strandat 3785.724 kb on - strand, within Dsui_3520at 3785.739 kb on - strand, within Dsui_3520at 3785.805 kb on - strand, within Dsui_3520at 3785.910 kb on - strand, within Dsui_3520at 3785.919 kb on - strand, within Dsui_3520at 3785.944 kb on + strandat 3785.952 kb on - strand, within Dsui_3520at 3785.988 kb on + strand, within Dsui_3520at 3786.001 kb on - strand, within Dsui_3520at 3786.063 kb on - strand, within Dsui_3520at 3786.138 kb on - strand, within Dsui_3520at 3786.146 kb on - strand, within Dsui_3520at 3786.176 kb on - strand, within Dsui_3520at 3786.176 kb on - strand, within Dsui_3520at 3786.361 kb on + strand, within Dsui_3520at 3786.369 kb on - strand, within Dsui_3520at 3786.420 kb on - strand, within Dsui_3520at 3786.436 kb on + strand, within Dsui_3520at 3786.508 kb on + strand, within Dsui_3520at 3786.519 kb on + strand, within Dsui_3520at 3786.536 kb on + strand, within Dsui_3520at 3786.544 kb on - strand, within Dsui_3520at 3786.551 kb on + strandat 3786.566 kb on - strand, within Dsui_3520at 3786.568 kb on + strand, within Dsui_3520at 3786.632 kb on - strand, within Dsui_3520at 3786.673 kb on + strand, within Dsui_3520at 3786.816 kb on - strand, within Dsui_3520at 3786.828 kb on - strand, within Dsui_3520at 3787.080 kb on - strand, within Dsui_3520at 3787.129 kb on + strandat 3787.329 kb on - strandat 3787.384 kb on + strandat 3787.430 kb on + strandat 3787.571 kb on + strand, within Dsui_3521at 3787.757 kb on - strand, within Dsui_3521at 3787.757 kb on - strand, within Dsui_3521at 3787.775 kb on + strandat 3787.783 kb on - strand, within Dsui_3521at 3787.817 kb on + strand, within Dsui_3521at 3787.825 kb on - strand, within Dsui_3521at 3788.034 kb on + strandat 3788.082 kb on - strand, within Dsui_3521at 3788.096 kb on + strand, within Dsui_3521at 3788.121 kb on - strand, within Dsui_3521at 3788.169 kb on - strand, within Dsui_3521at 3788.207 kb on - strand, within Dsui_3521at 3788.215 kb on + strandat 3788.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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3,783,332 - Dsui_3519 0.48 +0.0
3,783,384 - Dsui_3519 0.51 -0.2
3,783,514 + Dsui_3519 0.60 -1.6
3,783,522 + Dsui_3519 0.60 -1.6
3,783,551 - Dsui_3519 0.62 -0.1
3,783,590 + Dsui_3519 0.64 -1.2
3,783,612 + Dsui_3519 0.66 -1.6
3,783,640 + Dsui_3519 0.68 +0.4
3,783,664 - Dsui_3519 0.69 +0.5
3,783,752 - Dsui_3519 0.75 -0.1
3,784,104 + -2.0
3,784,131 + +0.4
3,784,188 - -0.3
3,784,188 - -0.3
3,784,543 - -3.3
3,784,562 - -1.8
3,784,586 + -0.6
3,784,646 - Dsui_3520 0.11 -2.1
3,784,745 - Dsui_3520 0.14 -2.0
3,784,783 - Dsui_3520 0.15 -2.6
3,784,853 + Dsui_3520 0.18 -2.0
3,784,894 - Dsui_3520 0.19 -2.1
3,784,944 - Dsui_3520 0.21 -3.4
3,784,998 - Dsui_3520 0.22 -2.9
3,785,052 + Dsui_3520 0.24 -0.6
3,785,174 + Dsui_3520 0.28 -1.2
3,785,325 + Dsui_3520 0.33 -1.6
3,785,333 - Dsui_3520 0.33 -2.3
3,785,333 - Dsui_3520 0.33 -2.7
3,785,362 + Dsui_3520 0.34 +0.4
3,785,450 + Dsui_3520 0.37 -1.2
3,785,458 + +0.4
3,785,469 + Dsui_3520 0.37 -0.6
3,785,572 + Dsui_3520 0.41 +0.4
3,785,606 - Dsui_3520 0.42 -3.1
3,785,609 + Dsui_3520 0.42 +0.4
3,785,710 + +0.4
3,785,724 - Dsui_3520 0.46 -2.3
3,785,739 - Dsui_3520 0.46 -1.5
3,785,805 - Dsui_3520 0.48 -2.0
3,785,910 - Dsui_3520 0.52 -1.6
3,785,919 - Dsui_3520 0.52 -2.6
3,785,944 + -0.6
3,785,952 - Dsui_3520 0.53 -2.4
3,785,988 + Dsui_3520 0.54 -1.2
3,786,001 - Dsui_3520 0.55 -1.6
3,786,063 - Dsui_3520 0.57 -2.6
3,786,138 - Dsui_3520 0.59 -1.5
3,786,146 - Dsui_3520 0.59 -1.5
3,786,176 - Dsui_3520 0.60 -2.7
3,786,176 - Dsui_3520 0.60 -2.8
3,786,361 + Dsui_3520 0.66 +0.4
3,786,369 - Dsui_3520 0.66 -1.7
3,786,420 - Dsui_3520 0.68 -1.9
3,786,436 + Dsui_3520 0.69 +0.4
3,786,508 + Dsui_3520 0.71 -2.6
3,786,519 + Dsui_3520 0.71 -2.0
3,786,536 + Dsui_3520 0.72 -0.6
3,786,544 - Dsui_3520 0.72 -2.8
3,786,551 + -0.6
3,786,566 - Dsui_3520 0.73 -2.1
3,786,568 + Dsui_3520 0.73 -2.0
3,786,632 - Dsui_3520 0.75 -2.6
3,786,673 + Dsui_3520 0.76 +0.4
3,786,816 - Dsui_3520 0.81 -2.1
3,786,828 - Dsui_3520 0.81 -2.4
3,787,080 - Dsui_3520 0.89 -0.4
3,787,129 + +0.4
3,787,329 - -2.4
3,787,384 + +0.4
3,787,430 + +0.4
3,787,571 + Dsui_3521 0.13 +1.4
3,787,757 - Dsui_3521 0.30 -2.0
3,787,757 - Dsui_3521 0.30 -2.4
3,787,775 + +0.4
3,787,783 - Dsui_3521 0.32 -2.9
3,787,817 + Dsui_3521 0.35 -2.5
3,787,825 - Dsui_3521 0.36 -2.3
3,788,034 + -1.6
3,788,082 - Dsui_3521 0.58 -2.3
3,788,096 + Dsui_3521 0.59 -0.6
3,788,121 - Dsui_3521 0.61 -2.8
3,788,169 - Dsui_3521 0.65 -2.1
3,788,207 - Dsui_3521 0.69 -2.3
3,788,215 + -0.6
3,788,238 + -0.6

Or see this region's nucleotide sequence