Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3519 and Dsui_3520 are separated by 166 nucleotides Dsui_3520 and Dsui_3521 are separated by 4 nucleotides
Dsui_3519: Dsui_3519 - 2-isopropylmalate synthase, bacterial type, at 3,782,596 to 3,784,137
_3519
Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411
_3520
Dsui_3521: Dsui_3521 - membrane-fusion protein, at 3,787,416 to 3,788,567
_3521
Position (kb)
3784
3785
3786
3787
3788 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3783.332 kb on - strand, within Dsui_3519 at 3783.384 kb on - strand, within Dsui_3519 at 3783.514 kb on + strand, within Dsui_3519 at 3783.522 kb on + strand, within Dsui_3519 at 3783.551 kb on - strand, within Dsui_3519 at 3783.590 kb on + strand, within Dsui_3519 at 3783.612 kb on + strand, within Dsui_3519 at 3783.640 kb on + strand, within Dsui_3519 at 3783.664 kb on - strand, within Dsui_3519 at 3783.752 kb on - strand, within Dsui_3519 at 3784.104 kb on + strand at 3784.131 kb on + strand at 3784.188 kb on - strand at 3784.188 kb on - strand at 3784.543 kb on - strand at 3784.562 kb on - strand at 3784.586 kb on + strand at 3784.646 kb on - strand, within Dsui_3520 at 3784.745 kb on - strand, within Dsui_3520 at 3784.783 kb on - strand, within Dsui_3520 at 3784.853 kb on + strand, within Dsui_3520 at 3784.894 kb on - strand, within Dsui_3520 at 3784.944 kb on - strand, within Dsui_3520 at 3784.998 kb on - strand, within Dsui_3520 at 3785.052 kb on + strand, within Dsui_3520 at 3785.174 kb on + strand, within Dsui_3520 at 3785.325 kb on + strand, within Dsui_3520 at 3785.333 kb on - strand, within Dsui_3520 at 3785.333 kb on - strand, within Dsui_3520 at 3785.362 kb on + strand, within Dsui_3520 at 3785.450 kb on + strand, within Dsui_3520 at 3785.458 kb on + strand at 3785.469 kb on + strand, within Dsui_3520 at 3785.572 kb on + strand, within Dsui_3520 at 3785.606 kb on - strand, within Dsui_3520 at 3785.609 kb on + strand, within Dsui_3520 at 3785.710 kb on + strand at 3785.724 kb on - strand, within Dsui_3520 at 3785.739 kb on - strand, within Dsui_3520 at 3785.805 kb on - strand, within Dsui_3520 at 3785.910 kb on - strand, within Dsui_3520 at 3785.919 kb on - strand, within Dsui_3520 at 3785.944 kb on + strand at 3785.952 kb on - strand, within Dsui_3520 at 3785.988 kb on + strand, within Dsui_3520 at 3786.001 kb on - strand, within Dsui_3520 at 3786.063 kb on - strand, within Dsui_3520 at 3786.138 kb on - strand, within Dsui_3520 at 3786.146 kb on - strand, within Dsui_3520 at 3786.176 kb on - strand, within Dsui_3520 at 3786.176 kb on - strand, within Dsui_3520 at 3786.361 kb on + strand, within Dsui_3520 at 3786.369 kb on - strand, within Dsui_3520 at 3786.420 kb on - strand, within Dsui_3520 at 3786.436 kb on + strand, within Dsui_3520 at 3786.508 kb on + strand, within Dsui_3520 at 3786.519 kb on + strand, within Dsui_3520 at 3786.536 kb on + strand, within Dsui_3520 at 3786.544 kb on - strand, within Dsui_3520 at 3786.551 kb on + strand at 3786.566 kb on - strand, within Dsui_3520 at 3786.568 kb on + strand, within Dsui_3520 at 3786.632 kb on - strand, within Dsui_3520 at 3786.673 kb on + strand, within Dsui_3520 at 3786.816 kb on - strand, within Dsui_3520 at 3786.828 kb on - strand, within Dsui_3520 at 3787.080 kb on - strand, within Dsui_3520 at 3787.129 kb on + strand at 3787.329 kb on - strand at 3787.384 kb on + strand at 3787.430 kb on + strand at 3787.571 kb on + strand, within Dsui_3521 at 3787.757 kb on - strand, within Dsui_3521 at 3787.757 kb on - strand, within Dsui_3521 at 3787.775 kb on + strand at 3787.783 kb on - strand, within Dsui_3521 at 3787.817 kb on + strand, within Dsui_3521 at 3787.825 kb on - strand, within Dsui_3521 at 3788.034 kb on + strand at 3788.082 kb on - strand, within Dsui_3521 at 3788.096 kb on + strand, within Dsui_3521 at 3788.121 kb on - strand, within Dsui_3521 at 3788.169 kb on - strand, within Dsui_3521 at 3788.207 kb on - strand, within Dsui_3521 at 3788.215 kb on + strand at 3788.238 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 3,783,332 - Dsui_3519 0.48 +0.0 3,783,384 - Dsui_3519 0.51 -0.2 3,783,514 + Dsui_3519 0.60 -1.6 3,783,522 + Dsui_3519 0.60 -1.6 3,783,551 - Dsui_3519 0.62 -0.1 3,783,590 + Dsui_3519 0.64 -1.2 3,783,612 + Dsui_3519 0.66 -1.6 3,783,640 + Dsui_3519 0.68 +0.4 3,783,664 - Dsui_3519 0.69 +0.5 3,783,752 - Dsui_3519 0.75 -0.1 3,784,104 + -2.0 3,784,131 + +0.4 3,784,188 - -0.3 3,784,188 - -0.3 3,784,543 - -3.3 3,784,562 - -1.8 3,784,586 + -0.6 3,784,646 - Dsui_3520 0.11 -2.1 3,784,745 - Dsui_3520 0.14 -2.0 3,784,783 - Dsui_3520 0.15 -2.6 3,784,853 + Dsui_3520 0.18 -2.0 3,784,894 - Dsui_3520 0.19 -2.1 3,784,944 - Dsui_3520 0.21 -3.4 3,784,998 - Dsui_3520 0.22 -2.9 3,785,052 + Dsui_3520 0.24 -0.6 3,785,174 + Dsui_3520 0.28 -1.2 3,785,325 + Dsui_3520 0.33 -1.6 3,785,333 - Dsui_3520 0.33 -2.3 3,785,333 - Dsui_3520 0.33 -2.7 3,785,362 + Dsui_3520 0.34 +0.4 3,785,450 + Dsui_3520 0.37 -1.2 3,785,458 + +0.4 3,785,469 + Dsui_3520 0.37 -0.6 3,785,572 + Dsui_3520 0.41 +0.4 3,785,606 - Dsui_3520 0.42 -3.1 3,785,609 + Dsui_3520 0.42 +0.4 3,785,710 + +0.4 3,785,724 - Dsui_3520 0.46 -2.3 3,785,739 - Dsui_3520 0.46 -1.5 3,785,805 - Dsui_3520 0.48 -2.0 3,785,910 - Dsui_3520 0.52 -1.6 3,785,919 - Dsui_3520 0.52 -2.6 3,785,944 + -0.6 3,785,952 - Dsui_3520 0.53 -2.4 3,785,988 + Dsui_3520 0.54 -1.2 3,786,001 - Dsui_3520 0.55 -1.6 3,786,063 - Dsui_3520 0.57 -2.6 3,786,138 - Dsui_3520 0.59 -1.5 3,786,146 - Dsui_3520 0.59 -1.5 3,786,176 - Dsui_3520 0.60 -2.7 3,786,176 - Dsui_3520 0.60 -2.8 3,786,361 + Dsui_3520 0.66 +0.4 3,786,369 - Dsui_3520 0.66 -1.7 3,786,420 - Dsui_3520 0.68 -1.9 3,786,436 + Dsui_3520 0.69 +0.4 3,786,508 + Dsui_3520 0.71 -2.6 3,786,519 + Dsui_3520 0.71 -2.0 3,786,536 + Dsui_3520 0.72 -0.6 3,786,544 - Dsui_3520 0.72 -2.8 3,786,551 + -0.6 3,786,566 - Dsui_3520 0.73 -2.1 3,786,568 + Dsui_3520 0.73 -2.0 3,786,632 - Dsui_3520 0.75 -2.6 3,786,673 + Dsui_3520 0.76 +0.4 3,786,816 - Dsui_3520 0.81 -2.1 3,786,828 - Dsui_3520 0.81 -2.4 3,787,080 - Dsui_3520 0.89 -0.4 3,787,129 + +0.4 3,787,329 - -2.4 3,787,384 + +0.4 3,787,430 + +0.4 3,787,571 + Dsui_3521 0.13 +1.4 3,787,757 - Dsui_3521 0.30 -2.0 3,787,757 - Dsui_3521 0.30 -2.4 3,787,775 + +0.4 3,787,783 - Dsui_3521 0.32 -2.9 3,787,817 + Dsui_3521 0.35 -2.5 3,787,825 - Dsui_3521 0.36 -2.3 3,788,034 + -1.6 3,788,082 - Dsui_3521 0.58 -2.3 3,788,096 + Dsui_3521 0.59 -0.6 3,788,121 - Dsui_3521 0.61 -2.8 3,788,169 - Dsui_3521 0.65 -2.1 3,788,207 - Dsui_3521 0.69 -2.3 3,788,215 + -0.6 3,788,238 + -0.6
Or see this region's nucleotide sequence