Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3438 and Dsui_3439 are separated by 145 nucleotides Dsui_3439 and Dsui_3440 are separated by 127 nucleotides Dsui_3440 and Dsui_3441 overlap by 4 nucleotides
Dsui_3438: Dsui_3438 - beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, at 3,693,271 to 3,694,170
_3438
Dsui_3439: Dsui_3439 - methyl-accepting chemotaxis protein, at 3,694,316 to 3,695,965
_3439
Dsui_3440: Dsui_3440 - Protein of unknown function (DUF2892), at 3,696,093 to 3,696,302
_3440
Dsui_3441: Dsui_3441 - cation/multidrug efflux pump, at 3,696,299 to 3,699,550
_3441
Position (kb)
3694
3695
3696 Strain fitness (log2 ratio)
-2
-1
0
1 at 3693.411 kb on + strand at 3693.541 kb on + strand, within Dsui_3438 at 3693.549 kb on - strand, within Dsui_3438 at 3693.618 kb on + strand at 3693.883 kb on - strand, within Dsui_3438 at 3693.943 kb on + strand, within Dsui_3438 at 3693.981 kb on + strand, within Dsui_3438 at 3694.106 kb on + strand at 3694.124 kb on - strand at 3694.151 kb on - strand at 3694.409 kb on + strand at 3694.504 kb on + strand, within Dsui_3439 at 3694.523 kb on - strand, within Dsui_3439 at 3694.540 kb on + strand, within Dsui_3439 at 3694.853 kb on - strand, within Dsui_3439 at 3694.969 kb on + strand at 3695.060 kb on - strand, within Dsui_3439 at 3695.086 kb on + strand, within Dsui_3439 at 3695.094 kb on - strand, within Dsui_3439 at 3695.119 kb on + strand at 3695.160 kb on - strand, within Dsui_3439 at 3695.221 kb on + strand, within Dsui_3439 at 3695.233 kb on + strand, within Dsui_3439 at 3695.325 kb on - strand, within Dsui_3439 at 3695.611 kb on + strand, within Dsui_3439 at 3695.660 kb on + strand, within Dsui_3439 at 3695.683 kb on - strand, within Dsui_3439 at 3695.684 kb on - strand, within Dsui_3439 at 3695.730 kb on + strand, within Dsui_3439 at 3695.820 kb on - strand at 3695.925 kb on + strand at 3696.036 kb on - strand at 3696.115 kb on + strand at 3696.167 kb on - strand, within Dsui_3440 at 3696.255 kb on - strand, within Dsui_3440 at 3696.298 kb on - strand at 3696.313 kb on + strand at 3696.529 kb on - strand at 3696.559 kb on + strand at 3696.612 kb on - strand at 3696.679 kb on + strand at 3696.716 kb on - strand, within Dsui_3441 at 3696.751 kb on - strand, within Dsui_3441 at 3696.839 kb on - strand, within Dsui_3441 at 3696.885 kb on + strand, within Dsui_3441
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 3,693,411 + +0.4 3,693,541 + Dsui_3438 0.30 -2.6 3,693,549 - Dsui_3438 0.31 +0.1 3,693,618 + +0.4 3,693,883 - Dsui_3438 0.68 -0.1 3,693,943 + Dsui_3438 0.75 -1.2 3,693,981 + Dsui_3438 0.79 -2.5 3,694,106 + +0.4 3,694,124 - +0.0 3,694,151 - -0.2 3,694,409 + -2.6 3,694,504 + Dsui_3439 0.11 -1.6 3,694,523 - Dsui_3439 0.13 +0.2 3,694,540 + Dsui_3439 0.14 +0.4 3,694,853 - Dsui_3439 0.33 +0.1 3,694,969 + -1.2 3,695,060 - Dsui_3439 0.45 +0.3 3,695,086 + Dsui_3439 0.47 -1.6 3,695,094 - Dsui_3439 0.47 -0.6 3,695,119 + +0.4 3,695,160 - Dsui_3439 0.51 -0.9 3,695,221 + Dsui_3439 0.55 -1.2 3,695,233 + Dsui_3439 0.56 -0.6 3,695,325 - Dsui_3439 0.61 -0.7 3,695,611 + Dsui_3439 0.78 -2.6 3,695,660 + Dsui_3439 0.81 -1.6 3,695,683 - Dsui_3439 0.83 -0.3 3,695,684 - Dsui_3439 0.83 -0.8 3,695,730 + Dsui_3439 0.86 -0.6 3,695,820 - -0.8 3,695,925 + +0.4 3,696,036 - -0.6 3,696,115 + +0.4 3,696,167 - Dsui_3440 0.35 -0.6 3,696,255 - Dsui_3440 0.77 -2.0 3,696,298 - -1.2 3,696,313 + -1.6 3,696,529 - -2.5 3,696,559 + -0.6 3,696,612 - -1.2 3,696,679 + +0.4 3,696,716 - Dsui_3441 0.13 -1.2 3,696,751 - Dsui_3441 0.14 -1.2 3,696,839 - Dsui_3441 0.17 -0.2 3,696,885 + Dsui_3441 0.18 +0.4
Or see this region's nucleotide sequence