Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3359 and Dsui_3360 overlap by 4 nucleotides Dsui_3360 and Dsui_3361 are separated by 253 nucleotides Dsui_3361 and Dsui_3362 are separated by 130 nucleotides
Dsui_3359: Dsui_3359 - hypothetical protein, at 3,600,039 to 3,600,548
_3359
Dsui_3360: Dsui_3360 - hypothetical protein, at 3,600,545 to 3,601,003
_3360
Dsui_3361: Dsui_3361 - hypothetical protein, at 3,601,257 to 3,601,541
_3361
Dsui_3362: Dsui_3362 - hypothetical protein, at 3,601,672 to 3,602,118
_3362
Position (kb)
3601
3602 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3600.306 kb on + strand, within Dsui_3359 at 3600.318 kb on + strand, within Dsui_3359 at 3600.326 kb on - strand at 3600.336 kb on - strand at 3600.371 kb on + strand, within Dsui_3359 at 3600.371 kb on + strand, within Dsui_3359 at 3600.379 kb on - strand, within Dsui_3359 at 3600.415 kb on + strand, within Dsui_3359 at 3600.441 kb on - strand, within Dsui_3359 at 3600.468 kb on + strand, within Dsui_3359 at 3600.475 kb on + strand, within Dsui_3359 at 3600.492 kb on - strand at 3600.498 kb on + strand at 3600.508 kb on + strand at 3600.508 kb on + strand at 3600.516 kb on - strand at 3600.521 kb on + strand at 3600.559 kb on - strand at 3600.574 kb on - strand at 3600.593 kb on - strand at 3600.603 kb on + strand, within Dsui_3360 at 3600.660 kb on - strand, within Dsui_3360 at 3600.665 kb on - strand at 3600.681 kb on + strand, within Dsui_3360 at 3600.681 kb on + strand, within Dsui_3360 at 3600.688 kb on + strand, within Dsui_3360 at 3600.689 kb on - strand, within Dsui_3360 at 3600.733 kb on + strand, within Dsui_3360 at 3600.768 kb on - strand, within Dsui_3360 at 3600.784 kb on + strand, within Dsui_3360 at 3600.784 kb on + strand, within Dsui_3360 at 3600.797 kb on + strand, within Dsui_3360 at 3600.805 kb on - strand, within Dsui_3360 at 3600.858 kb on + strand, within Dsui_3360 at 3600.868 kb on + strand, within Dsui_3360 at 3600.869 kb on - strand, within Dsui_3360 at 3600.880 kb on + strand, within Dsui_3360 at 3600.930 kb on + strand, within Dsui_3360 at 3600.988 kb on - strand at 3600.988 kb on - strand at 3600.990 kb on + strand at 3600.990 kb on + strand at 3600.998 kb on - strand at 3601.035 kb on - strand at 3601.044 kb on - strand at 3601.058 kb on + strand at 3601.064 kb on - strand at 3601.064 kb on - strand at 3601.074 kb on - strand at 3601.090 kb on - strand at 3601.116 kb on + strand at 3601.121 kb on + strand at 3601.129 kb on - strand at 3601.129 kb on - strand at 3601.136 kb on - strand at 3601.148 kb on + strand at 3601.158 kb on + strand at 3601.191 kb on - strand at 3601.229 kb on + strand at 3601.372 kb on + strand, within Dsui_3361 at 3601.372 kb on + strand, within Dsui_3361 at 3601.380 kb on - strand at 3601.380 kb on - strand, within Dsui_3361 at 3601.433 kb on + strand, within Dsui_3361 at 3601.477 kb on - strand, within Dsui_3361 at 3601.505 kb on - strand, within Dsui_3361 at 3601.532 kb on - strand at 3601.537 kb on + strand at 3601.573 kb on - strand at 3601.578 kb on + strand at 3601.593 kb on + strand at 3601.601 kb on - strand at 3601.647 kb on - strand at 3601.665 kb on + strand at 3601.665 kb on - strand at 3601.686 kb on - strand at 3601.720 kb on + strand, within Dsui_3362 at 3601.727 kb on - strand, within Dsui_3362 at 3601.744 kb on - strand, within Dsui_3362 at 3601.752 kb on + strand, within Dsui_3362 at 3601.752 kb on + strand, within Dsui_3362 at 3601.760 kb on - strand, within Dsui_3362 at 3601.782 kb on - strand, within Dsui_3362 at 3601.820 kb on - strand, within Dsui_3362 at 3601.892 kb on - strand, within Dsui_3362 at 3601.910 kb on - strand, within Dsui_3362 at 3601.917 kb on - strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.923 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.958 kb on + strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand, within Dsui_3362 at 3601.966 kb on - strand at 3601.966 kb on - strand, within Dsui_3362 at 3601.991 kb on + strand, within Dsui_3362 at 3601.991 kb on + strand, within Dsui_3362 at 3601.993 kb on - strand, within Dsui_3362 at 3601.999 kb on - strand at 3602.015 kb on - strand, within Dsui_3362 at 3602.039 kb on + strand, within Dsui_3362 at 3602.103 kb on - strand at 3602.162 kb on + strand at 3602.174 kb on + strand at 3602.198 kb on - strand at 3602.198 kb on - strand at 3602.203 kb on + strand at 3602.203 kb on + strand at 3602.203 kb on + strand at 3602.211 kb on - strand at 3602.226 kb on - strand at 3602.226 kb on - strand at 3602.226 kb on - strand at 3602.226 kb on - strand at 3602.234 kb on - strand at 3602.257 kb on + strand at 3602.318 kb on + strand at 3602.318 kb on + strand at 3602.323 kb on + strand at 3602.328 kb on + strand at 3602.328 kb on + strand at 3602.328 kb on + strand at 3602.331 kb on - strand at 3602.335 kb on + strand at 3602.340 kb on + strand at 3602.343 kb on - strand at 3602.348 kb on - strand at 3602.357 kb on + strand at 3602.389 kb on + strand at 3602.392 kb on - strand at 3602.402 kb on - strand at 3602.442 kb on + strand at 3602.458 kb on - strand at 3602.485 kb on + strand at 3602.486 kb on + strand at 3602.486 kb on + strand at 3602.486 kb on + strand at 3602.486 kb on + strand at 3602.494 kb on - strand at 3602.494 kb on - strand at 3602.494 kb on - strand at 3602.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 3,600,306 + Dsui_3359 0.52 +0.3 3,600,318 + Dsui_3359 0.55 -1.3 3,600,326 - +0.3 3,600,336 - +0.3 3,600,371 + Dsui_3359 0.65 -1.7 3,600,371 + Dsui_3359 0.65 -1.3 3,600,379 - Dsui_3359 0.67 +0.3 3,600,415 + Dsui_3359 0.74 +0.3 3,600,441 - Dsui_3359 0.79 +0.3 3,600,468 + Dsui_3359 0.84 -0.7 3,600,475 + Dsui_3359 0.85 -0.7 3,600,492 - +0.3 3,600,498 + +0.3 3,600,508 + -2.5 3,600,508 + -0.7 3,600,516 - +0.3 3,600,521 + -0.7 3,600,559 - +0.4 3,600,574 - -3.3 3,600,593 - -0.6 3,600,603 + Dsui_3360 0.13 +0.4 3,600,660 - Dsui_3360 0.25 +0.4 3,600,665 - +0.4 3,600,681 + Dsui_3360 0.30 -2.0 3,600,681 + Dsui_3360 0.30 +0.4 3,600,688 + Dsui_3360 0.31 -1.2 3,600,689 - Dsui_3360 0.31 -1.2 3,600,733 + Dsui_3360 0.41 +0.4 3,600,768 - Dsui_3360 0.49 -2.0 3,600,784 + Dsui_3360 0.52 -1.6 3,600,784 + Dsui_3360 0.52 -1.2 3,600,797 + Dsui_3360 0.55 +0.4 3,600,805 - Dsui_3360 0.57 -0.6 3,600,858 + Dsui_3360 0.68 -1.2 3,600,868 + Dsui_3360 0.70 -0.6 3,600,869 - Dsui_3360 0.71 -1.2 3,600,880 + Dsui_3360 0.73 -1.2 3,600,930 + Dsui_3360 0.84 -2.0 3,600,988 - -0.6 3,600,988 - +0.4 3,600,990 + -1.2 3,600,990 + -0.6 3,600,998 - +0.4 3,601,035 - +0.4 3,601,044 - -1.6 3,601,058 + -0.6 3,601,064 - -2.0 3,601,064 - -0.6 3,601,074 - -1.6 3,601,090 - +0.4 3,601,116 + -0.6 3,601,121 + +0.4 3,601,129 - +0.4 3,601,129 - +0.4 3,601,136 - +0.4 3,601,148 + +0.4 3,601,158 + -0.6 3,601,191 - -0.6 3,601,229 + +0.4 3,601,372 + Dsui_3361 0.40 -0.6 3,601,372 + Dsui_3361 0.40 +0.4 3,601,380 - +0.4 3,601,380 - Dsui_3361 0.43 -1.6 3,601,433 + Dsui_3361 0.62 -2.2 3,601,477 - Dsui_3361 0.77 -1.6 3,601,505 - Dsui_3361 0.87 -0.6 3,601,532 - -1.2 3,601,537 + -2.0 3,601,573 - -2.5 3,601,578 + +0.0 3,601,593 + +0.1 3,601,601 - -0.6 3,601,647 - -1.2 3,601,665 + +0.5 3,601,665 - -0.6 3,601,686 - -1.6 3,601,720 + Dsui_3362 0.11 -0.0 3,601,727 - Dsui_3362 0.12 -0.6 3,601,744 - Dsui_3362 0.16 +0.4 3,601,752 + Dsui_3362 0.18 -0.5 3,601,752 + Dsui_3362 0.18 -1.2 3,601,760 - Dsui_3362 0.20 -2.0 3,601,782 - Dsui_3362 0.25 -1.6 3,601,820 - Dsui_3362 0.33 +0.4 3,601,892 - Dsui_3362 0.49 +0.4 3,601,910 - Dsui_3362 0.53 +0.4 3,601,917 - Dsui_3362 0.55 +0.4 3,601,923 + Dsui_3362 0.56 -0.1 3,601,923 + Dsui_3362 0.56 +0.1 3,601,923 + Dsui_3362 0.56 -0.2 3,601,923 + Dsui_3362 0.56 +0.7 3,601,958 + Dsui_3362 0.64 -0.6 3,601,958 + Dsui_3362 0.64 +0.2 3,601,958 + Dsui_3362 0.64 -0.2 3,601,958 + Dsui_3362 0.64 +0.4 3,601,958 + Dsui_3362 0.64 -0.4 3,601,958 + Dsui_3362 0.64 -0.6 3,601,966 - Dsui_3362 0.66 +0.4 3,601,966 - Dsui_3362 0.66 -2.2 3,601,966 - Dsui_3362 0.66 -0.6 3,601,966 - Dsui_3362 0.66 -1.2 3,601,966 - +0.4 3,601,966 - Dsui_3362 0.66 +0.4 3,601,991 + Dsui_3362 0.71 -0.2 3,601,991 + Dsui_3362 0.71 -0.2 3,601,993 - Dsui_3362 0.72 -2.6 3,601,999 - -0.6 3,602,015 - Dsui_3362 0.77 -2.5 3,602,039 + Dsui_3362 0.82 -0.2 3,602,103 - +0.4 3,602,162 + -0.8 3,602,174 + -1.8 3,602,198 - -0.6 3,602,198 - -2.5 3,602,203 + +0.2 3,602,203 + +0.1 3,602,203 + -0.0 3,602,211 - +0.4 3,602,226 - -1.6 3,602,226 - -0.6 3,602,226 - +0.4 3,602,226 - -1.2 3,602,234 - +0.4 3,602,257 + +0.3 3,602,318 + +0.6 3,602,318 + +0.1 3,602,323 + -0.1 3,602,328 + -0.1 3,602,328 + -0.3 3,602,328 + +0.3 3,602,331 - -0.6 3,602,335 + -0.5 3,602,340 + +0.0 3,602,343 - +0.4 3,602,348 - +0.4 3,602,357 + -0.0 3,602,389 + +0.2 3,602,392 - +0.4 3,602,402 - -1.2 3,602,442 + -0.1 3,602,458 - -1.6 3,602,485 + -0.2 3,602,486 + +1.0 3,602,486 + -0.2 3,602,486 + +0.3 3,602,486 + -0.2 3,602,494 - -1.2 3,602,494 - -2.2 3,602,494 - +0.4 3,602,524 - -0.6
Or see this region's nucleotide sequence