Strain Fitness in Dechlorosoma suillum PS around Dsui_3361

Experiment: ALP with Chloride 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3359 and Dsui_3360 overlap by 4 nucleotidesDsui_3360 and Dsui_3361 are separated by 253 nucleotidesDsui_3361 and Dsui_3362 are separated by 130 nucleotides Dsui_3359: Dsui_3359 - hypothetical protein, at 3,600,039 to 3,600,548 _3359 Dsui_3360: Dsui_3360 - hypothetical protein, at 3,600,545 to 3,601,003 _3360 Dsui_3361: Dsui_3361 - hypothetical protein, at 3,601,257 to 3,601,541 _3361 Dsui_3362: Dsui_3362 - hypothetical protein, at 3,601,672 to 3,602,118 _3362 Position (kb) 3601 3602Strain fitness (log2 ratio) -3 -2 -1 0 1at 3600.306 kb on + strand, within Dsui_3359at 3600.318 kb on + strand, within Dsui_3359at 3600.326 kb on - strandat 3600.336 kb on - strandat 3600.371 kb on + strand, within Dsui_3359at 3600.371 kb on + strand, within Dsui_3359at 3600.379 kb on - strand, within Dsui_3359at 3600.415 kb on + strand, within Dsui_3359at 3600.441 kb on - strand, within Dsui_3359at 3600.468 kb on + strand, within Dsui_3359at 3600.475 kb on + strand, within Dsui_3359at 3600.492 kb on - strandat 3600.498 kb on + strandat 3600.508 kb on + strandat 3600.508 kb on + strandat 3600.516 kb on - strandat 3600.521 kb on + strandat 3600.559 kb on - strandat 3600.574 kb on - strandat 3600.593 kb on - strandat 3600.603 kb on + strand, within Dsui_3360at 3600.660 kb on - strand, within Dsui_3360at 3600.665 kb on - strandat 3600.681 kb on + strand, within Dsui_3360at 3600.681 kb on + strand, within Dsui_3360at 3600.688 kb on + strand, within Dsui_3360at 3600.689 kb on - strand, within Dsui_3360at 3600.733 kb on + strand, within Dsui_3360at 3600.768 kb on - strand, within Dsui_3360at 3600.784 kb on + strand, within Dsui_3360at 3600.784 kb on + strand, within Dsui_3360at 3600.797 kb on + strand, within Dsui_3360at 3600.805 kb on - strand, within Dsui_3360at 3600.858 kb on + strand, within Dsui_3360at 3600.868 kb on + strand, within Dsui_3360at 3600.869 kb on - strand, within Dsui_3360at 3600.880 kb on + strand, within Dsui_3360at 3600.930 kb on + strand, within Dsui_3360at 3600.988 kb on - strandat 3600.988 kb on - strandat 3600.990 kb on + strandat 3600.990 kb on + strandat 3600.998 kb on - strandat 3601.035 kb on - strandat 3601.044 kb on - strandat 3601.058 kb on + strandat 3601.064 kb on - strandat 3601.064 kb on - strandat 3601.074 kb on - strandat 3601.090 kb on - strandat 3601.116 kb on + strandat 3601.121 kb on + strandat 3601.129 kb on - strandat 3601.129 kb on - strandat 3601.136 kb on - strandat 3601.148 kb on + strandat 3601.158 kb on + strandat 3601.191 kb on - strandat 3601.229 kb on + strandat 3601.372 kb on + strand, within Dsui_3361at 3601.372 kb on + strand, within Dsui_3361at 3601.380 kb on - strandat 3601.380 kb on - strand, within Dsui_3361at 3601.433 kb on + strand, within Dsui_3361at 3601.477 kb on - strand, within Dsui_3361at 3601.505 kb on - strand, within Dsui_3361at 3601.532 kb on - strandat 3601.537 kb on + strandat 3601.573 kb on - strandat 3601.578 kb on + strandat 3601.593 kb on + strandat 3601.601 kb on - strandat 3601.647 kb on - strandat 3601.665 kb on + strandat 3601.665 kb on - strandat 3601.686 kb on - strandat 3601.720 kb on + strand, within Dsui_3362at 3601.727 kb on - strand, within Dsui_3362at 3601.744 kb on - strand, within Dsui_3362at 3601.752 kb on + strand, within Dsui_3362at 3601.752 kb on + strand, within Dsui_3362at 3601.760 kb on - strand, within Dsui_3362at 3601.782 kb on - strand, within Dsui_3362at 3601.820 kb on - strand, within Dsui_3362at 3601.892 kb on - strand, within Dsui_3362at 3601.910 kb on - strand, within Dsui_3362at 3601.917 kb on - strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.923 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.958 kb on + strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strand, within Dsui_3362at 3601.966 kb on - strandat 3601.966 kb on - strand, within Dsui_3362at 3601.991 kb on + strand, within Dsui_3362at 3601.991 kb on + strand, within Dsui_3362at 3601.993 kb on - strand, within Dsui_3362at 3601.999 kb on - strandat 3602.015 kb on - strand, within Dsui_3362at 3602.039 kb on + strand, within Dsui_3362at 3602.103 kb on - strandat 3602.162 kb on + strandat 3602.174 kb on + strandat 3602.198 kb on - strandat 3602.198 kb on - strandat 3602.203 kb on + strandat 3602.203 kb on + strandat 3602.203 kb on + strandat 3602.211 kb on - strandat 3602.226 kb on - strandat 3602.226 kb on - strandat 3602.226 kb on - strandat 3602.226 kb on - strandat 3602.234 kb on - strandat 3602.257 kb on + strandat 3602.318 kb on + strandat 3602.318 kb on + strandat 3602.323 kb on + strandat 3602.328 kb on + strandat 3602.328 kb on + strandat 3602.328 kb on + strandat 3602.331 kb on - strandat 3602.335 kb on + strandat 3602.340 kb on + strandat 3602.343 kb on - strandat 3602.348 kb on - strandat 3602.357 kb on + strandat 3602.389 kb on + strandat 3602.392 kb on - strandat 3602.402 kb on - strandat 3602.442 kb on + strandat 3602.458 kb on - strandat 3602.485 kb on + strandat 3602.486 kb on + strandat 3602.486 kb on + strandat 3602.486 kb on + strandat 3602.486 kb on + strandat 3602.494 kb on - strandat 3602.494 kb on - strandat 3602.494 kb on - strandat 3602.524 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
remove
3,600,306 + Dsui_3359 0.52 +0.3
3,600,318 + Dsui_3359 0.55 -1.3
3,600,326 - +0.3
3,600,336 - +0.3
3,600,371 + Dsui_3359 0.65 -1.7
3,600,371 + Dsui_3359 0.65 -1.3
3,600,379 - Dsui_3359 0.67 +0.3
3,600,415 + Dsui_3359 0.74 +0.3
3,600,441 - Dsui_3359 0.79 +0.3
3,600,468 + Dsui_3359 0.84 -0.7
3,600,475 + Dsui_3359 0.85 -0.7
3,600,492 - +0.3
3,600,498 + +0.3
3,600,508 + -2.5
3,600,508 + -0.7
3,600,516 - +0.3
3,600,521 + -0.7
3,600,559 - +0.4
3,600,574 - -3.3
3,600,593 - -0.6
3,600,603 + Dsui_3360 0.13 +0.4
3,600,660 - Dsui_3360 0.25 +0.4
3,600,665 - +0.4
3,600,681 + Dsui_3360 0.30 -2.0
3,600,681 + Dsui_3360 0.30 +0.4
3,600,688 + Dsui_3360 0.31 -1.2
3,600,689 - Dsui_3360 0.31 -1.2
3,600,733 + Dsui_3360 0.41 +0.4
3,600,768 - Dsui_3360 0.49 -2.0
3,600,784 + Dsui_3360 0.52 -1.6
3,600,784 + Dsui_3360 0.52 -1.2
3,600,797 + Dsui_3360 0.55 +0.4
3,600,805 - Dsui_3360 0.57 -0.6
3,600,858 + Dsui_3360 0.68 -1.2
3,600,868 + Dsui_3360 0.70 -0.6
3,600,869 - Dsui_3360 0.71 -1.2
3,600,880 + Dsui_3360 0.73 -1.2
3,600,930 + Dsui_3360 0.84 -2.0
3,600,988 - -0.6
3,600,988 - +0.4
3,600,990 + -1.2
3,600,990 + -0.6
3,600,998 - +0.4
3,601,035 - +0.4
3,601,044 - -1.6
3,601,058 + -0.6
3,601,064 - -2.0
3,601,064 - -0.6
3,601,074 - -1.6
3,601,090 - +0.4
3,601,116 + -0.6
3,601,121 + +0.4
3,601,129 - +0.4
3,601,129 - +0.4
3,601,136 - +0.4
3,601,148 + +0.4
3,601,158 + -0.6
3,601,191 - -0.6
3,601,229 + +0.4
3,601,372 + Dsui_3361 0.40 -0.6
3,601,372 + Dsui_3361 0.40 +0.4
3,601,380 - +0.4
3,601,380 - Dsui_3361 0.43 -1.6
3,601,433 + Dsui_3361 0.62 -2.2
3,601,477 - Dsui_3361 0.77 -1.6
3,601,505 - Dsui_3361 0.87 -0.6
3,601,532 - -1.2
3,601,537 + -2.0
3,601,573 - -2.5
3,601,578 + +0.0
3,601,593 + +0.1
3,601,601 - -0.6
3,601,647 - -1.2
3,601,665 + +0.5
3,601,665 - -0.6
3,601,686 - -1.6
3,601,720 + Dsui_3362 0.11 -0.0
3,601,727 - Dsui_3362 0.12 -0.6
3,601,744 - Dsui_3362 0.16 +0.4
3,601,752 + Dsui_3362 0.18 -0.5
3,601,752 + Dsui_3362 0.18 -1.2
3,601,760 - Dsui_3362 0.20 -2.0
3,601,782 - Dsui_3362 0.25 -1.6
3,601,820 - Dsui_3362 0.33 +0.4
3,601,892 - Dsui_3362 0.49 +0.4
3,601,910 - Dsui_3362 0.53 +0.4
3,601,917 - Dsui_3362 0.55 +0.4
3,601,923 + Dsui_3362 0.56 -0.1
3,601,923 + Dsui_3362 0.56 +0.1
3,601,923 + Dsui_3362 0.56 -0.2
3,601,923 + Dsui_3362 0.56 +0.7
3,601,958 + Dsui_3362 0.64 -0.6
3,601,958 + Dsui_3362 0.64 +0.2
3,601,958 + Dsui_3362 0.64 -0.2
3,601,958 + Dsui_3362 0.64 +0.4
3,601,958 + Dsui_3362 0.64 -0.4
3,601,958 + Dsui_3362 0.64 -0.6
3,601,966 - Dsui_3362 0.66 +0.4
3,601,966 - Dsui_3362 0.66 -2.2
3,601,966 - Dsui_3362 0.66 -0.6
3,601,966 - Dsui_3362 0.66 -1.2
3,601,966 - +0.4
3,601,966 - Dsui_3362 0.66 +0.4
3,601,991 + Dsui_3362 0.71 -0.2
3,601,991 + Dsui_3362 0.71 -0.2
3,601,993 - Dsui_3362 0.72 -2.6
3,601,999 - -0.6
3,602,015 - Dsui_3362 0.77 -2.5
3,602,039 + Dsui_3362 0.82 -0.2
3,602,103 - +0.4
3,602,162 + -0.8
3,602,174 + -1.8
3,602,198 - -0.6
3,602,198 - -2.5
3,602,203 + +0.2
3,602,203 + +0.1
3,602,203 + -0.0
3,602,211 - +0.4
3,602,226 - -1.6
3,602,226 - -0.6
3,602,226 - +0.4
3,602,226 - -1.2
3,602,234 - +0.4
3,602,257 + +0.3
3,602,318 + +0.6
3,602,318 + +0.1
3,602,323 + -0.1
3,602,328 + -0.1
3,602,328 + -0.3
3,602,328 + +0.3
3,602,331 - -0.6
3,602,335 + -0.5
3,602,340 + +0.0
3,602,343 - +0.4
3,602,348 - +0.4
3,602,357 + -0.0
3,602,389 + +0.2
3,602,392 - +0.4
3,602,402 - -1.2
3,602,442 + -0.1
3,602,458 - -1.6
3,602,485 + -0.2
3,602,486 + +1.0
3,602,486 + -0.2
3,602,486 + +0.3
3,602,486 + -0.2
3,602,494 - -1.2
3,602,494 - -2.2
3,602,494 - +0.4
3,602,524 - -0.6

Or see this region's nucleotide sequence