Strain Fitness in Dechlorosoma suillum PS around Dsui_3345

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3344 and Dsui_3345 are separated by 10 nucleotidesDsui_3345 and Dsui_3346 are separated by 5 nucleotides Dsui_3344: Dsui_3344 - phosphomannomutase, at 3,582,780 to 3,584,174 _3344 Dsui_3345: Dsui_3345 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 3,584,185 to 3,585,429 _3345 Dsui_3346: Dsui_3346 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 3,585,435 to 3,586,697 _3346 Position (kb) 3584 3585 3586Strain fitness (log2 ratio) -2 -1 0 1at 3584.221 kb on + strandat 3584.233 kb on - strandat 3584.266 kb on + strandat 3584.354 kb on + strand, within Dsui_3345at 3584.402 kb on - strand, within Dsui_3345at 3584.497 kb on + strand, within Dsui_3345at 3584.647 kb on + strand, within Dsui_3345at 3584.675 kb on + strand, within Dsui_3345at 3584.714 kb on + strand, within Dsui_3345at 3584.719 kb on + strand, within Dsui_3345at 3584.726 kb on + strand, within Dsui_3345at 3584.726 kb on + strand, within Dsui_3345at 3584.726 kb on + strand, within Dsui_3345at 3584.731 kb on + strand, within Dsui_3345at 3584.734 kb on - strand, within Dsui_3345at 3584.834 kb on + strand, within Dsui_3345at 3584.908 kb on - strand, within Dsui_3345at 3584.908 kb on - strand, within Dsui_3345at 3585.021 kb on + strand, within Dsui_3345at 3585.527 kb on + strandat 3585.583 kb on + strand, within Dsui_3346at 3585.591 kb on + strand, within Dsui_3346at 3585.625 kb on - strand, within Dsui_3346at 3585.676 kb on + strand, within Dsui_3346at 3585.707 kb on + strand, within Dsui_3346at 3585.715 kb on - strand, within Dsui_3346at 3585.715 kb on - strand, within Dsui_3346at 3585.715 kb on - strand, within Dsui_3346at 3585.736 kb on + strand, within Dsui_3346at 3585.736 kb on + strand, within Dsui_3346at 3585.748 kb on + strand, within Dsui_3346at 3585.751 kb on - strand, within Dsui_3346at 3585.766 kb on - strandat 3585.769 kb on + strand, within Dsui_3346at 3585.790 kb on + strand, within Dsui_3346at 3585.798 kb on - strand, within Dsui_3346at 3585.885 kb on - strandat 3585.964 kb on + strand, within Dsui_3346at 3586.031 kb on + strand, within Dsui_3346at 3586.031 kb on + strand, within Dsui_3346at 3586.041 kb on - strandat 3586.106 kb on - strand, within Dsui_3346at 3586.108 kb on + strand, within Dsui_3346at 3586.117 kb on + strand, within Dsui_3346at 3586.136 kb on - strand, within Dsui_3346at 3586.192 kb on - strand, within Dsui_3346at 3586.224 kb on - strand, within Dsui_3346

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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3,584,221 + -0.2
3,584,233 - +0.3
3,584,266 + -0.2
3,584,354 + Dsui_3345 0.14 -1.6
3,584,402 - Dsui_3345 0.17 -0.7
3,584,497 + Dsui_3345 0.25 -0.7
3,584,647 + Dsui_3345 0.37 -0.1
3,584,675 + Dsui_3345 0.39 -0.2
3,584,714 + Dsui_3345 0.42 -0.4
3,584,719 + Dsui_3345 0.43 -1.5
3,584,726 + Dsui_3345 0.43 +0.5
3,584,726 + Dsui_3345 0.43 -0.4
3,584,726 + Dsui_3345 0.43 -1.0
3,584,731 + Dsui_3345 0.44 -0.7
3,584,734 - Dsui_3345 0.44 -1.3
3,584,834 + Dsui_3345 0.52 -0.8
3,584,908 - Dsui_3345 0.58 +0.3
3,584,908 - Dsui_3345 0.58 -2.5
3,585,021 + Dsui_3345 0.67 +0.0
3,585,527 + -0.7
3,585,583 + Dsui_3346 0.12 -0.7
3,585,591 + Dsui_3346 0.12 -0.5
3,585,625 - Dsui_3346 0.15 -1.3
3,585,676 + Dsui_3346 0.19 -0.4
3,585,707 + Dsui_3346 0.22 +0.0
3,585,715 - Dsui_3346 0.22 +0.3
3,585,715 - Dsui_3346 0.22 -0.7
3,585,715 - Dsui_3346 0.22 -1.7
3,585,736 + Dsui_3346 0.24 -0.5
3,585,736 + Dsui_3346 0.24 -1.0
3,585,748 + Dsui_3346 0.25 -0.1
3,585,751 - Dsui_3346 0.25 -1.7
3,585,766 - -0.7
3,585,769 + Dsui_3346 0.26 -0.9
3,585,790 + Dsui_3346 0.28 -0.2
3,585,798 - Dsui_3346 0.29 -0.7
3,585,885 - +0.3
3,585,964 + Dsui_3346 0.42 +0.3
3,586,031 + Dsui_3346 0.47 +0.3
3,586,031 + Dsui_3346 0.47 -2.7
3,586,041 - +0.3
3,586,106 - Dsui_3346 0.53 -2.0
3,586,108 + Dsui_3346 0.53 -0.3
3,586,117 + Dsui_3346 0.54 -0.3
3,586,136 - Dsui_3346 0.56 -1.3
3,586,192 - Dsui_3346 0.60 +0.3
3,586,224 - Dsui_3346 0.62 -1.3

Or see this region's nucleotide sequence