Strain Fitness in Dechlorosoma suillum PS around Dsui_3317

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3315 and Dsui_3316 are separated by 18 nucleotidesDsui_3316 and Dsui_3317 are separated by 105 nucleotidesDsui_3317 and Dsui_3318 are separated by 88 nucleotides Dsui_3315: Dsui_3315 - biopolymer transport protein, at 3,555,778 to 3,556,497 _3315 Dsui_3316: Dsui_3316 - Gram-negative bacterial tonB protein, at 3,556,516 to 3,557,289 _3316 Dsui_3317: Dsui_3317 - cytochrome c551/c552, at 3,557,395 to 3,557,733 _3317 Dsui_3318: Dsui_3318 - cytochrome c, mono- and diheme variants family, at 3,557,822 to 3,559,462 _3318 Position (kb) 3557 3558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3556.449 kb on + strandat 3556.511 kb on - strandat 3556.513 kb on + strandat 3556.587 kb on - strandat 3556.632 kb on + strandat 3556.673 kb on + strandat 3556.762 kb on - strand, within Dsui_3316at 3556.798 kb on - strand, within Dsui_3316at 3556.802 kb on - strand, within Dsui_3316at 3556.845 kb on - strand, within Dsui_3316at 3556.964 kb on + strand, within Dsui_3316at 3556.972 kb on - strand, within Dsui_3316at 3557.093 kb on + strandat 3557.116 kb on - strand, within Dsui_3316at 3557.177 kb on - strand, within Dsui_3316at 3557.187 kb on - strand, within Dsui_3316at 3557.239 kb on + strandat 3557.294 kb on + strandat 3557.506 kb on - strandat 3557.506 kb on - strand, within Dsui_3317at 3557.705 kb on - strandat 3557.705 kb on - strandat 3557.707 kb on + strandat 3557.715 kb on - strandat 3557.833 kb on - strandat 3557.837 kb on - strandat 3558.028 kb on - strand, within Dsui_3318at 3558.028 kb on - strand, within Dsui_3318at 3558.035 kb on - strand, within Dsui_3318at 3558.070 kb on + strand, within Dsui_3318at 3558.070 kb on + strandat 3558.075 kb on + strand, within Dsui_3318at 3558.078 kb on - strand, within Dsui_3318at 3558.082 kb on - strand, within Dsui_3318at 3558.095 kb on - strand, within Dsui_3318at 3558.113 kb on - strand, within Dsui_3318at 3558.189 kb on + strandat 3558.304 kb on + strand, within Dsui_3318at 3558.312 kb on - strand, within Dsui_3318at 3558.371 kb on - strand, within Dsui_3318at 3558.448 kb on - strand, within Dsui_3318at 3558.466 kb on + strandat 3558.563 kb on - strand, within Dsui_3318at 3558.573 kb on - strand, within Dsui_3318at 3558.605 kb on - strand, within Dsui_3318at 3558.683 kb on - strandat 3558.689 kb on - strand, within Dsui_3318at 3558.707 kb on + strand, within Dsui_3318at 3558.727 kb on - strand, within Dsui_3318

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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3,556,449 + -0.6
3,556,511 - -1.4
3,556,513 + -2.4
3,556,587 - -0.9
3,556,632 + +0.4
3,556,673 + +2.0
3,556,762 - Dsui_3316 0.32 +0.0
3,556,798 - Dsui_3316 0.36 +0.1
3,556,802 - Dsui_3316 0.37 +1.3
3,556,845 - Dsui_3316 0.43 -1.7
3,556,964 + Dsui_3316 0.58 -0.6
3,556,972 - Dsui_3316 0.59 -0.9
3,557,093 + +0.4
3,557,116 - Dsui_3316 0.78 -0.7
3,557,177 - Dsui_3316 0.85 -0.1
3,557,187 - Dsui_3316 0.87 +0.1
3,557,239 + -2.4
3,557,294 + -0.6
3,557,506 - +0.4
3,557,506 - Dsui_3317 0.33 -0.6
3,557,705 - -1.2
3,557,705 - +0.4
3,557,707 + +0.4
3,557,715 - -1.9
3,557,833 - +0.4
3,557,837 - -1.0
3,558,028 - Dsui_3318 0.13 -1.3
3,558,028 - Dsui_3318 0.13 -3.6
3,558,035 - Dsui_3318 0.13 -1.2
3,558,070 + Dsui_3318 0.15 +0.4
3,558,070 + +0.4
3,558,075 + Dsui_3318 0.15 -0.6
3,558,078 - Dsui_3318 0.16 -1.2
3,558,082 - Dsui_3318 0.16 -1.2
3,558,095 - Dsui_3318 0.17 +0.4
3,558,113 - Dsui_3318 0.18 -2.4
3,558,189 + -1.9
3,558,304 + Dsui_3318 0.29 -1.6
3,558,312 - Dsui_3318 0.30 -0.6
3,558,371 - Dsui_3318 0.33 +0.4
3,558,448 - Dsui_3318 0.38 -1.2
3,558,466 + +0.4
3,558,563 - Dsui_3318 0.45 -0.6
3,558,573 - Dsui_3318 0.46 -1.6
3,558,605 - Dsui_3318 0.48 -1.6
3,558,683 - +0.4
3,558,689 - Dsui_3318 0.53 +0.4
3,558,707 + Dsui_3318 0.54 -1.6
3,558,727 - Dsui_3318 0.55 +0.4

Or see this region's nucleotide sequence