Strain Fitness in Dechlorosoma suillum PS around Dsui_3281

Experiment: ALP with Chloride 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3279 and Dsui_3280 are separated by 89 nucleotidesDsui_3280 and Dsui_3281 overlap by 4 nucleotidesDsui_3281 and Dsui_3282 are separated by 13 nucleotides Dsui_3279: Dsui_3279 - formate dehydrogenase family accessory protein FdhD, at 3,516,399 to 3,517,352 _3279 Dsui_3280: Dsui_3280 - formate dehydrogenase, gamma subunit, at 3,517,442 to 3,518,062 _3280 Dsui_3281: Dsui_3281 - formate dehydrogenase, beta subunit, Fe-S containing, at 3,518,059 to 3,518,949 _3281 Dsui_3282: Dsui_3282 - formate dehydrogenase, alpha subunit, at 3,518,963 to 3,522,016 _3282 Position (kb) 3518 3519Strain fitness (log2 ratio) -2 -1 0 1at 3517.064 kb on - strand, within Dsui_3279at 3517.075 kb on - strand, within Dsui_3279at 3517.090 kb on - strand, within Dsui_3279at 3517.122 kb on + strandat 3517.130 kb on - strand, within Dsui_3279at 3517.130 kb on - strand, within Dsui_3279at 3517.206 kb on + strandat 3517.238 kb on - strand, within Dsui_3279at 3517.267 kb on - strandat 3517.286 kb on + strandat 3517.361 kb on + strandat 3517.361 kb on + strandat 3517.369 kb on + strandat 3517.369 kb on - strandat 3517.507 kb on - strand, within Dsui_3280at 3517.552 kb on + strandat 3517.557 kb on + strandat 3517.628 kb on + strandat 3517.628 kb on + strandat 3517.636 kb on - strand, within Dsui_3280at 3517.691 kb on + strand, within Dsui_3280at 3517.725 kb on - strand, within Dsui_3280at 3517.729 kb on - strand, within Dsui_3280at 3517.786 kb on + strandat 3517.910 kb on - strand, within Dsui_3280at 3517.951 kb on - strand, within Dsui_3280at 3517.951 kb on - strand, within Dsui_3280at 3517.987 kb on + strand, within Dsui_3280at 3517.987 kb on - strand, within Dsui_3280at 3518.079 kb on - strandat 3518.107 kb on - strandat 3518.137 kb on - strandat 3518.137 kb on - strandat 3518.154 kb on + strand, within Dsui_3281at 3518.171 kb on + strandat 3518.179 kb on - strand, within Dsui_3281at 3518.179 kb on - strand, within Dsui_3281at 3518.181 kb on + strand, within Dsui_3281at 3518.183 kb on + strandat 3518.207 kb on - strand, within Dsui_3281at 3518.249 kb on - strand, within Dsui_3281at 3518.292 kb on + strandat 3518.416 kb on - strand, within Dsui_3281at 3518.438 kb on - strand, within Dsui_3281at 3518.478 kb on - strand, within Dsui_3281at 3518.478 kb on - strand, within Dsui_3281at 3518.501 kb on - strand, within Dsui_3281at 3518.516 kb on - strand, within Dsui_3281at 3518.616 kb on + strand, within Dsui_3281at 3518.624 kb on - strand, within Dsui_3281at 3518.626 kb on + strandat 3518.699 kb on - strand, within Dsui_3281at 3518.700 kb on + strand, within Dsui_3281at 3518.708 kb on - strand, within Dsui_3281at 3518.731 kb on + strandat 3518.731 kb on + strandat 3518.731 kb on + strandat 3518.739 kb on - strand, within Dsui_3281at 3518.766 kb on + strand, within Dsui_3281at 3518.879 kb on - strandat 3518.961 kb on + strandat 3518.999 kb on - strandat 3519.042 kb on + strandat 3519.048 kb on - strandat 3519.078 kb on - strandat 3519.094 kb on - strandat 3519.137 kb on - strandat 3519.159 kb on + strandat 3519.325 kb on + strandat 3519.356 kb on + strand, within Dsui_3282at 3519.405 kb on - strand, within Dsui_3282at 3519.415 kb on - strand, within Dsui_3282at 3519.579 kb on - strand, within Dsui_3282at 3519.610 kb on - strand, within Dsui_3282at 3519.708 kb on - strand, within Dsui_3282at 3519.710 kb on + strandat 3519.728 kb on + strandat 3519.741 kb on - strand, within Dsui_3282at 3519.875 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
remove
3,517,064 - Dsui_3279 0.70 -0.6
3,517,075 - Dsui_3279 0.71 -0.8
3,517,090 - Dsui_3279 0.72 -0.6
3,517,122 + +0.4
3,517,130 - Dsui_3279 0.77 -0.0
3,517,130 - Dsui_3279 0.77 -0.4
3,517,206 + -0.6
3,517,238 - Dsui_3279 0.88 -0.5
3,517,267 - +0.2
3,517,286 + -0.6
3,517,361 + -0.6
3,517,361 + -0.6
3,517,369 + +0.4
3,517,369 - -0.9
3,517,507 - Dsui_3280 0.10 -1.4
3,517,552 + -1.6
3,517,557 + -0.6
3,517,628 + +0.4
3,517,628 + +0.4
3,517,636 - Dsui_3280 0.31 -0.6
3,517,691 + Dsui_3280 0.40 -1.2
3,517,725 - Dsui_3280 0.46 -1.0
3,517,729 - Dsui_3280 0.46 -1.4
3,517,786 + +0.4
3,517,910 - Dsui_3280 0.75 -0.7
3,517,951 - Dsui_3280 0.82 -1.6
3,517,951 - Dsui_3280 0.82 -0.6
3,517,987 + Dsui_3280 0.88 +0.4
3,517,987 - Dsui_3280 0.88 -0.7
3,518,079 - -0.1
3,518,107 - -0.5
3,518,137 - -0.2
3,518,137 - -0.3
3,518,154 + Dsui_3281 0.11 -0.6
3,518,171 + +0.4
3,518,179 - Dsui_3281 0.13 -1.1
3,518,179 - Dsui_3281 0.13 -1.0
3,518,181 + Dsui_3281 0.14 -0.6
3,518,183 + +0.4
3,518,207 - Dsui_3281 0.17 -0.3
3,518,249 - Dsui_3281 0.21 -1.1
3,518,292 + -0.6
3,518,416 - Dsui_3281 0.40 -0.1
3,518,438 - Dsui_3281 0.43 -1.1
3,518,478 - Dsui_3281 0.47 +0.1
3,518,478 - Dsui_3281 0.47 -0.8
3,518,501 - Dsui_3281 0.50 -0.6
3,518,516 - Dsui_3281 0.51 -0.6
3,518,616 + Dsui_3281 0.63 -2.2
3,518,624 - Dsui_3281 0.63 -0.5
3,518,626 + +0.4
3,518,699 - Dsui_3281 0.72 -0.7
3,518,700 + Dsui_3281 0.72 -0.6
3,518,708 - Dsui_3281 0.73 -1.0
3,518,731 + +0.4
3,518,731 + -0.6
3,518,731 + -0.6
3,518,739 - Dsui_3281 0.76 -1.0
3,518,766 + Dsui_3281 0.79 -1.2
3,518,879 - -1.3
3,518,961 + -2.4
3,518,999 - -0.5
3,519,042 + +0.4
3,519,048 - -0.5
3,519,078 - -0.3
3,519,094 - -0.7
3,519,137 - +0.1
3,519,159 + +0.4
3,519,325 + +0.4
3,519,356 + Dsui_3282 0.13 -2.2
3,519,405 - Dsui_3282 0.14 -1.3
3,519,415 - Dsui_3282 0.15 -0.6
3,519,579 - Dsui_3282 0.20 -0.5
3,519,610 - Dsui_3282 0.21 -0.4
3,519,708 - Dsui_3282 0.24 -1.0
3,519,710 + +0.4
3,519,728 + +0.4
3,519,741 - Dsui_3282 0.25 -1.0
3,519,875 + +0.4

Or see this region's nucleotide sequence