Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3268 and Dsui_3269 are separated by 103 nucleotides Dsui_3269 and Dsui_3270 are separated by 71 nucleotides Dsui_3270 and Dsui_3271 are separated by 70 nucleotides
Dsui_3268: Dsui_3268 - exodeoxyribonuclease VII, large subunit, at 3,506,812 to 3,508,212
_3268
Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903
_3269
Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652
_3270
Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724
_3271
Position (kb)
3508
3509
3510 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3508.263 kb on + strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.275 kb on + strand at 3508.994 kb on + strand at 3508.999 kb on + strand at 3509.001 kb on - strand at 3509.002 kb on - strand at 3509.106 kb on - strand at 3509.106 kb on - strand at 3509.276 kb on + strand, within Dsui_3270 at 3509.282 kb on + strand, within Dsui_3270 at 3509.290 kb on - strand, within Dsui_3270 at 3509.345 kb on + strand, within Dsui_3270 at 3509.497 kb on - strand, within Dsui_3270 at 3509.590 kb on - strand at 3509.596 kb on - strand at 3509.654 kb on - strand at 3509.718 kb on + strand at 3509.718 kb on + strand at 3509.763 kb on + strand at 3509.771 kb on - strand at 3509.878 kb on - strand, within Dsui_3271 at 3510.010 kb on + strand, within Dsui_3271 at 3510.018 kb on - strand at 3510.103 kb on + strand, within Dsui_3271 at 3510.111 kb on - strand at 3510.117 kb on - strand at 3510.239 kb on + strand, within Dsui_3271 at 3510.267 kb on + strand, within Dsui_3271 at 3510.267 kb on + strand, within Dsui_3271 at 3510.369 kb on + strand at 3510.379 kb on + strand at 3510.426 kb on - strand, within Dsui_3271 at 3510.445 kb on + strand, within Dsui_3271 at 3510.445 kb on + strand, within Dsui_3271 at 3510.453 kb on - strand, within Dsui_3271 at 3510.453 kb on - strand at 3510.453 kb on - strand, within Dsui_3271 at 3510.453 kb on - strand at 3510.453 kb on - strand, within Dsui_3271 at 3510.466 kb on + strand, within Dsui_3271 at 3510.474 kb on - strand at 3510.474 kb on - strand at 3510.636 kb on + strand at 3510.643 kb on + strand at 3510.643 kb on + strand at 3510.651 kb on - strand at 3510.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 3,508,263 + +0.4 3,508,271 - -1.2 3,508,271 - +0.4 3,508,271 - -0.2 3,508,271 - +0.4 3,508,275 + -0.5 3,508,994 + -0.6 3,508,999 + -0.2 3,509,001 - -0.6 3,509,002 - -1.2 3,509,106 - -0.6 3,509,106 - -0.6 3,509,276 + Dsui_3270 0.44 -2.0 3,509,282 + Dsui_3270 0.45 -1.6 3,509,290 - Dsui_3270 0.46 -1.2 3,509,345 + Dsui_3270 0.55 -2.2 3,509,497 - Dsui_3270 0.77 -1.2 3,509,590 - -0.6 3,509,596 - -1.2 3,509,654 - +0.4 3,509,718 + -1.6 3,509,718 + -2.2 3,509,763 + -4.1 3,509,771 - +0.4 3,509,878 - Dsui_3271 0.15 -1.2 3,510,010 + Dsui_3271 0.29 -0.6 3,510,018 - +0.4 3,510,103 + Dsui_3271 0.38 -1.2 3,510,111 - +0.4 3,510,117 - +0.4 3,510,239 + Dsui_3271 0.51 -1.2 3,510,267 + Dsui_3271 0.54 -1.2 3,510,267 + Dsui_3271 0.54 +0.4 3,510,369 + +0.4 3,510,379 + +0.4 3,510,426 - Dsui_3271 0.70 -1.6 3,510,445 + Dsui_3271 0.72 +1.4 3,510,445 + Dsui_3271 0.72 -1.2 3,510,453 - Dsui_3271 0.73 -2.0 3,510,453 - +0.4 3,510,453 - Dsui_3271 0.73 -0.6 3,510,453 - -0.6 3,510,453 - Dsui_3271 0.73 -1.2 3,510,466 + Dsui_3271 0.74 +0.4 3,510,474 - +0.4 3,510,474 - -1.6 3,510,636 + -0.6 3,510,643 + -1.6 3,510,643 + +0.4 3,510,651 - +0.4 3,510,651 - +0.4
Or see this region's nucleotide sequence