Strain Fitness in Dechlorosoma suillum PS around Dsui_3270

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3268 and Dsui_3269 are separated by 103 nucleotidesDsui_3269 and Dsui_3270 are separated by 71 nucleotidesDsui_3270 and Dsui_3271 are separated by 70 nucleotides Dsui_3268: Dsui_3268 - exodeoxyribonuclease VII, large subunit, at 3,506,812 to 3,508,212 _3268 Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903 _3269 Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652 _3270 Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724 _3271 Position (kb) 3508 3509 3510Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3508.263 kb on + strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.271 kb on - strandat 3508.275 kb on + strandat 3508.994 kb on + strandat 3508.999 kb on + strandat 3509.001 kb on - strandat 3509.002 kb on - strandat 3509.106 kb on - strandat 3509.106 kb on - strandat 3509.276 kb on + strand, within Dsui_3270at 3509.282 kb on + strand, within Dsui_3270at 3509.290 kb on - strand, within Dsui_3270at 3509.345 kb on + strand, within Dsui_3270at 3509.497 kb on - strand, within Dsui_3270at 3509.590 kb on - strandat 3509.596 kb on - strandat 3509.654 kb on - strandat 3509.718 kb on + strandat 3509.718 kb on + strandat 3509.763 kb on + strandat 3509.771 kb on - strandat 3509.878 kb on - strand, within Dsui_3271at 3510.010 kb on + strand, within Dsui_3271at 3510.018 kb on - strandat 3510.103 kb on + strand, within Dsui_3271at 3510.111 kb on - strandat 3510.117 kb on - strandat 3510.239 kb on + strand, within Dsui_3271at 3510.267 kb on + strand, within Dsui_3271at 3510.267 kb on + strand, within Dsui_3271at 3510.369 kb on + strandat 3510.379 kb on + strandat 3510.426 kb on - strand, within Dsui_3271at 3510.445 kb on + strand, within Dsui_3271at 3510.445 kb on + strand, within Dsui_3271at 3510.453 kb on - strand, within Dsui_3271at 3510.453 kb on - strandat 3510.453 kb on - strand, within Dsui_3271at 3510.453 kb on - strandat 3510.453 kb on - strand, within Dsui_3271at 3510.466 kb on + strand, within Dsui_3271at 3510.474 kb on - strandat 3510.474 kb on - strandat 3510.636 kb on + strandat 3510.643 kb on + strandat 3510.643 kb on + strandat 3510.651 kb on - strandat 3510.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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3,508,263 + +0.4
3,508,271 - -1.2
3,508,271 - +0.4
3,508,271 - -0.2
3,508,271 - +0.4
3,508,275 + -0.5
3,508,994 + -0.6
3,508,999 + -0.2
3,509,001 - -0.6
3,509,002 - -1.2
3,509,106 - -0.6
3,509,106 - -0.6
3,509,276 + Dsui_3270 0.44 -2.0
3,509,282 + Dsui_3270 0.45 -1.6
3,509,290 - Dsui_3270 0.46 -1.2
3,509,345 + Dsui_3270 0.55 -2.2
3,509,497 - Dsui_3270 0.77 -1.2
3,509,590 - -0.6
3,509,596 - -1.2
3,509,654 - +0.4
3,509,718 + -1.6
3,509,718 + -2.2
3,509,763 + -4.1
3,509,771 - +0.4
3,509,878 - Dsui_3271 0.15 -1.2
3,510,010 + Dsui_3271 0.29 -0.6
3,510,018 - +0.4
3,510,103 + Dsui_3271 0.38 -1.2
3,510,111 - +0.4
3,510,117 - +0.4
3,510,239 + Dsui_3271 0.51 -1.2
3,510,267 + Dsui_3271 0.54 -1.2
3,510,267 + Dsui_3271 0.54 +0.4
3,510,369 + +0.4
3,510,379 + +0.4
3,510,426 - Dsui_3271 0.70 -1.6
3,510,445 + Dsui_3271 0.72 +1.4
3,510,445 + Dsui_3271 0.72 -1.2
3,510,453 - Dsui_3271 0.73 -2.0
3,510,453 - +0.4
3,510,453 - Dsui_3271 0.73 -0.6
3,510,453 - -0.6
3,510,453 - Dsui_3271 0.73 -1.2
3,510,466 + Dsui_3271 0.74 +0.4
3,510,474 - +0.4
3,510,474 - -1.6
3,510,636 + -0.6
3,510,643 + -1.6
3,510,643 + +0.4
3,510,651 - +0.4
3,510,651 - +0.4

Or see this region's nucleotide sequence