Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3092 and Dsui_3093 are separated by 318 nucleotides Dsui_3093 and Dsui_3094 are separated by 136 nucleotides Dsui_3094 and Dsui_3095 are separated by 82 nucleotides Dsui_3095 and Dsui_3096 are separated by 121 nucleotides
Dsui_3092: Dsui_3092 - ATP-dependent DNA helicase RecQ, at 3,309,868 to 3,311,706
_3092
Dsui_3093: Dsui_3093 - hypothetical protein, at 3,312,025 to 3,312,339
_3093
Dsui_3094: Dsui_3094 - putative HD superfamily hydrolase, at 3,312,476 to 3,313,132
_3094
Dsui_3095: Dsui_3095 - Protein of unknown function (DUF2726), at 3,313,215 to 3,313,691
_3095
Dsui_3096: Dsui_3096 - NADH dehydrogenase, FAD-containing subunit, at 3,313,813 to 3,315,132
_3096
Position (kb)
3312
3313
3314 Strain fitness (log2 ratio)
-2
-1
0
1 at 3311.561 kb on + strand at 3311.590 kb on - strand at 3311.615 kb on + strand at 3311.816 kb on - strand at 3311.816 kb on - strand at 3311.854 kb on - strand at 3311.855 kb on - strand at 3311.865 kb on + strand at 3311.865 kb on + strand at 3311.873 kb on - strand at 3311.975 kb on - strand at 3312.020 kb on + strand at 3312.105 kb on + strand, within Dsui_3093 at 3312.137 kb on + strand, within Dsui_3093 at 3312.248 kb on + strand at 3312.276 kb on - strand at 3312.379 kb on - strand at 3312.400 kb on - strand at 3312.450 kb on - strand at 3312.624 kb on + strand at 3312.682 kb on + strand at 3312.683 kb on + strand, within Dsui_3094 at 3312.685 kb on - strand, within Dsui_3094 at 3312.685 kb on - strand, within Dsui_3094 at 3312.705 kb on + strand, within Dsui_3094 at 3312.705 kb on + strand at 3312.719 kb on + strand, within Dsui_3094 at 3312.727 kb on - strand, within Dsui_3094 at 3312.749 kb on - strand, within Dsui_3094 at 3312.932 kb on - strand, within Dsui_3094 at 3313.001 kb on + strand, within Dsui_3094 at 3313.085 kb on + strand at 3313.150 kb on - strand at 3313.150 kb on - strand at 3313.164 kb on + strand at 3313.222 kb on + strand at 3313.304 kb on + strand at 3313.391 kb on - strand at 3313.484 kb on - strand, within Dsui_3095 at 3313.502 kb on + strand, within Dsui_3095 at 3313.563 kb on - strand, within Dsui_3095 at 3313.563 kb on - strand, within Dsui_3095 at 3313.563 kb on - strand, within Dsui_3095 at 3313.574 kb on - strand, within Dsui_3095 at 3313.700 kb on + strand at 3313.848 kb on + strand at 3313.856 kb on - strand at 3313.919 kb on - strand at 3313.969 kb on - strand, within Dsui_3096 at 3314.090 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 3,311,561 + +1.7 3,311,590 - -0.6 3,311,615 + -0.2 3,311,816 - +0.4 3,311,816 - -1.2 3,311,854 - +0.4 3,311,855 - +0.4 3,311,865 + +0.4 3,311,865 + -0.6 3,311,873 - +0.4 3,311,975 - -0.6 3,312,020 + -0.6 3,312,105 + Dsui_3093 0.25 -0.6 3,312,137 + Dsui_3093 0.36 -0.6 3,312,248 + +0.4 3,312,276 - -0.6 3,312,379 - +0.4 3,312,400 - -1.6 3,312,450 - -1.6 3,312,624 + +0.4 3,312,682 + -0.6 3,312,683 + Dsui_3094 0.32 -1.2 3,312,685 - Dsui_3094 0.32 +0.4 3,312,685 - Dsui_3094 0.32 -2.2 3,312,705 + Dsui_3094 0.35 +0.4 3,312,705 + +0.4 3,312,719 + Dsui_3094 0.37 -1.2 3,312,727 - Dsui_3094 0.38 -2.2 3,312,749 - Dsui_3094 0.42 -1.2 3,312,932 - Dsui_3094 0.69 -0.6 3,313,001 + Dsui_3094 0.80 -0.6 3,313,085 + -0.6 3,313,150 - -2.2 3,313,150 - -0.6 3,313,164 + -0.6 3,313,222 + +0.4 3,313,304 + +0.4 3,313,391 - +0.4 3,313,484 - Dsui_3095 0.56 +0.4 3,313,502 + Dsui_3095 0.60 -1.6 3,313,563 - Dsui_3095 0.73 +0.4 3,313,563 - Dsui_3095 0.73 -0.6 3,313,563 - Dsui_3095 0.73 -1.6 3,313,574 - Dsui_3095 0.75 -1.6 3,313,700 + +0.4 3,313,848 + +0.4 3,313,856 - -0.6 3,313,919 - +0.4 3,313,969 - Dsui_3096 0.12 -1.9 3,314,090 + -1.2
Or see this region's nucleotide sequence