Strain Fitness in Dechlorosoma suillum PS around Dsui_3094

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3092 and Dsui_3093 are separated by 318 nucleotidesDsui_3093 and Dsui_3094 are separated by 136 nucleotidesDsui_3094 and Dsui_3095 are separated by 82 nucleotidesDsui_3095 and Dsui_3096 are separated by 121 nucleotides Dsui_3092: Dsui_3092 - ATP-dependent DNA helicase RecQ, at 3,309,868 to 3,311,706 _3092 Dsui_3093: Dsui_3093 - hypothetical protein, at 3,312,025 to 3,312,339 _3093 Dsui_3094: Dsui_3094 - putative HD superfamily hydrolase, at 3,312,476 to 3,313,132 _3094 Dsui_3095: Dsui_3095 - Protein of unknown function (DUF2726), at 3,313,215 to 3,313,691 _3095 Dsui_3096: Dsui_3096 - NADH dehydrogenase, FAD-containing subunit, at 3,313,813 to 3,315,132 _3096 Position (kb) 3312 3313 3314Strain fitness (log2 ratio) -2 -1 0 1at 3311.561 kb on + strandat 3311.590 kb on - strandat 3311.615 kb on + strandat 3311.816 kb on - strandat 3311.816 kb on - strandat 3311.854 kb on - strandat 3311.855 kb on - strandat 3311.865 kb on + strandat 3311.865 kb on + strandat 3311.873 kb on - strandat 3311.975 kb on - strandat 3312.020 kb on + strandat 3312.105 kb on + strand, within Dsui_3093at 3312.137 kb on + strand, within Dsui_3093at 3312.248 kb on + strandat 3312.276 kb on - strandat 3312.379 kb on - strandat 3312.400 kb on - strandat 3312.450 kb on - strandat 3312.624 kb on + strandat 3312.682 kb on + strandat 3312.683 kb on + strand, within Dsui_3094at 3312.685 kb on - strand, within Dsui_3094at 3312.685 kb on - strand, within Dsui_3094at 3312.705 kb on + strand, within Dsui_3094at 3312.705 kb on + strandat 3312.719 kb on + strand, within Dsui_3094at 3312.727 kb on - strand, within Dsui_3094at 3312.749 kb on - strand, within Dsui_3094at 3312.932 kb on - strand, within Dsui_3094at 3313.001 kb on + strand, within Dsui_3094at 3313.085 kb on + strandat 3313.150 kb on - strandat 3313.150 kb on - strandat 3313.164 kb on + strandat 3313.222 kb on + strandat 3313.304 kb on + strandat 3313.391 kb on - strandat 3313.484 kb on - strand, within Dsui_3095at 3313.502 kb on + strand, within Dsui_3095at 3313.563 kb on - strand, within Dsui_3095at 3313.563 kb on - strand, within Dsui_3095at 3313.563 kb on - strand, within Dsui_3095at 3313.574 kb on - strand, within Dsui_3095at 3313.700 kb on + strandat 3313.848 kb on + strandat 3313.856 kb on - strandat 3313.919 kb on - strandat 3313.969 kb on - strand, within Dsui_3096at 3314.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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3,311,561 + +1.7
3,311,590 - -0.6
3,311,615 + -0.2
3,311,816 - +0.4
3,311,816 - -1.2
3,311,854 - +0.4
3,311,855 - +0.4
3,311,865 + +0.4
3,311,865 + -0.6
3,311,873 - +0.4
3,311,975 - -0.6
3,312,020 + -0.6
3,312,105 + Dsui_3093 0.25 -0.6
3,312,137 + Dsui_3093 0.36 -0.6
3,312,248 + +0.4
3,312,276 - -0.6
3,312,379 - +0.4
3,312,400 - -1.6
3,312,450 - -1.6
3,312,624 + +0.4
3,312,682 + -0.6
3,312,683 + Dsui_3094 0.32 -1.2
3,312,685 - Dsui_3094 0.32 +0.4
3,312,685 - Dsui_3094 0.32 -2.2
3,312,705 + Dsui_3094 0.35 +0.4
3,312,705 + +0.4
3,312,719 + Dsui_3094 0.37 -1.2
3,312,727 - Dsui_3094 0.38 -2.2
3,312,749 - Dsui_3094 0.42 -1.2
3,312,932 - Dsui_3094 0.69 -0.6
3,313,001 + Dsui_3094 0.80 -0.6
3,313,085 + -0.6
3,313,150 - -2.2
3,313,150 - -0.6
3,313,164 + -0.6
3,313,222 + +0.4
3,313,304 + +0.4
3,313,391 - +0.4
3,313,484 - Dsui_3095 0.56 +0.4
3,313,502 + Dsui_3095 0.60 -1.6
3,313,563 - Dsui_3095 0.73 +0.4
3,313,563 - Dsui_3095 0.73 -0.6
3,313,563 - Dsui_3095 0.73 -1.6
3,313,574 - Dsui_3095 0.75 -1.6
3,313,700 + +0.4
3,313,848 + +0.4
3,313,856 - -0.6
3,313,919 - +0.4
3,313,969 - Dsui_3096 0.12 -1.9
3,314,090 + -1.2

Or see this region's nucleotide sequence