Strain Fitness in Dechlorosoma suillum PS around Dsui_3073

Experiment: ALP with Chloride 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3072 and Dsui_3073 are separated by 3 nucleotidesDsui_3073 and Dsui_3074 are separated by 128 nucleotides Dsui_3072: Dsui_3072 - DNA repair protein RecN, at 3,287,070 to 3,288,725 _3072 Dsui_3073: Dsui_3073 - putative sugar kinase, at 3,288,729 to 3,289,607 _3073 Dsui_3074: Dsui_3074 - heat shock gene repressor HrcA, at 3,289,736 to 3,290,764 _3074 Position (kb) 3288 3289 3290Strain fitness (log2 ratio) -1 0 1at 3287.922 kb on - strand, within Dsui_3072at 3287.950 kb on - strand, within Dsui_3072at 3287.986 kb on + strandat 3287.999 kb on - strand, within Dsui_3072at 3288.130 kb on + strandat 3288.406 kb on + strand, within Dsui_3072at 3288.517 kb on - strand, within Dsui_3072at 3288.544 kb on - strand, within Dsui_3072at 3288.727 kb on + strandat 3288.735 kb on - strandat 3289.636 kb on - strandat 3289.762 kb on + strandat 3289.783 kb on + strandat 3289.907 kb on + strand, within Dsui_3074at 3289.907 kb on + strand, within Dsui_3074at 3289.937 kb on + strand, within Dsui_3074at 3290.023 kb on + strand, within Dsui_3074at 3290.058 kb on + strand, within Dsui_3074at 3290.159 kb on + strand, within Dsui_3074at 3290.195 kb on - strandat 3290.278 kb on + strand, within Dsui_3074at 3290.375 kb on - strand, within Dsui_3074at 3290.411 kb on + strand, within Dsui_3074at 3290.414 kb on - strand, within Dsui_3074at 3290.489 kb on + strand, within Dsui_3074at 3290.497 kb on - strand, within Dsui_3074at 3290.507 kb on - strand, within Dsui_3074at 3290.563 kb on + strand, within Dsui_3074

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
remove
3,287,922 - Dsui_3072 0.51 -0.3
3,287,950 - Dsui_3072 0.53 -0.4
3,287,986 + +0.3
3,287,999 - Dsui_3072 0.56 +0.3
3,288,130 + +0.3
3,288,406 + Dsui_3072 0.81 +0.3
3,288,517 - Dsui_3072 0.87 -0.2
3,288,544 - Dsui_3072 0.89 -0.5
3,288,727 + +1.3
3,288,735 - -0.0
3,289,636 - -0.1
3,289,762 + -0.5
3,289,783 + -0.6
3,289,907 + Dsui_3074 0.17 -1.1
3,289,907 + Dsui_3074 0.17 -0.5
3,289,937 + Dsui_3074 0.20 -0.2
3,290,023 + Dsui_3074 0.28 -0.8
3,290,058 + Dsui_3074 0.31 -0.5
3,290,159 + Dsui_3074 0.41 -0.2
3,290,195 - +0.3
3,290,278 + Dsui_3074 0.53 -0.4
3,290,375 - Dsui_3074 0.62 -0.7
3,290,411 + Dsui_3074 0.66 -0.6
3,290,414 - Dsui_3074 0.66 +0.3
3,290,489 + Dsui_3074 0.73 -0.4
3,290,497 - Dsui_3074 0.74 +0.3
3,290,507 - Dsui_3074 0.75 +0.3
3,290,563 + Dsui_3074 0.80 -0.4

Or see this region's nucleotide sequence