Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2890 and Dsui_2891 are separated by 21 nucleotides Dsui_2891 and Dsui_2892 are separated by 86 nucleotides Dsui_2892 and Dsui_2893 are separated by 67 nucleotides
Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103
_2890
Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532
_2891
Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596
_2892
Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172
_2893
Position (kb)
3088
3089
3090
3091
3092
3093 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3087.714 kb on - strand, within Dsui_2890 at 3087.778 kb on + strand, within Dsui_2890 at 3087.873 kb on + strand, within Dsui_2890 at 3087.942 kb on + strand at 3087.983 kb on - strand at 3088.067 kb on + strand at 3088.080 kb on - strand at 3088.143 kb on - strand at 3088.144 kb on - strand at 3088.229 kb on + strand, within Dsui_2891 at 3088.420 kb on + strand, within Dsui_2891 at 3088.444 kb on + strand, within Dsui_2891 at 3088.449 kb on + strand at 3092.680 kb on - strand at 3092.963 kb on - strand, within Dsui_2893 at 3092.991 kb on + strand at 3093.092 kb on + strand, within Dsui_2893 at 3093.094 kb on - strand, within Dsui_2893 at 3093.129 kb on + strand at 3093.169 kb on - strand, within Dsui_2893 at 3093.180 kb on - strand, within Dsui_2893 at 3093.317 kb on + strand at 3093.358 kb on + strand at 3093.445 kb on - strand, within Dsui_2893
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 3,087,714 - Dsui_2890 0.80 -0.5 3,087,778 + Dsui_2890 0.83 -0.5 3,087,873 + Dsui_2890 0.88 -0.5 3,087,942 + -2.8 3,087,983 - -1.1 3,088,067 + -1.1 3,088,080 - -1.5 3,088,143 - -0.1 3,088,144 - -0.0 3,088,229 + Dsui_2891 0.25 +0.5 3,088,420 + Dsui_2891 0.72 +0.5 3,088,444 + Dsui_2891 0.78 +0.5 3,088,449 + +0.5 3,092,680 - -0.5 3,092,963 - Dsui_2893 0.20 +0.5 3,092,991 + +0.5 3,093,092 + Dsui_2893 0.28 -2.5 3,093,094 - Dsui_2893 0.28 -0.5 3,093,129 + +0.5 3,093,169 - Dsui_2893 0.33 -2.7 3,093,180 - Dsui_2893 0.34 -3.1 3,093,317 + +0.5 3,093,358 + +0.5 3,093,445 - Dsui_2893 0.52 -2.1
Or see this region's nucleotide sequence