Strain Fitness in Dechlorosoma suillum PS around Dsui_2877

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2876 and Dsui_2877 overlap by 1 nucleotidesDsui_2877 and Dsui_2878 overlap by 7 nucleotides Dsui_2876: Dsui_2876 - RND family efflux transporter, MFP subunit, at 3,070,474 to 3,071,730 _2876 Dsui_2877: Dsui_2877 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,071,730 to 3,072,476 _2877 Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690 _2878 Position (kb) 3071 3072 3073Strain fitness (log2 ratio) -3 -2 -1 0 1at 3070.772 kb on - strandat 3070.780 kb on + strand, within Dsui_2876at 3070.780 kb on + strand, within Dsui_2876at 3070.783 kb on + strand, within Dsui_2876at 3070.820 kb on + strand, within Dsui_2876at 3070.820 kb on + strand, within Dsui_2876at 3070.851 kb on + strand, within Dsui_2876at 3070.979 kb on - strandat 3071.069 kb on + strand, within Dsui_2876at 3071.069 kb on + strand, within Dsui_2876at 3071.120 kb on - strand, within Dsui_2876at 3071.304 kb on + strand, within Dsui_2876at 3071.385 kb on - strandat 3071.523 kb on + strand, within Dsui_2876at 3071.800 kb on - strandat 3071.813 kb on - strand, within Dsui_2877at 3071.921 kb on - strandat 3071.931 kb on - strandat 3072.069 kb on - strandat 3072.076 kb on - strandat 3072.148 kb on + strand, within Dsui_2877at 3072.187 kb on - strand, within Dsui_2877at 3072.246 kb on + strand, within Dsui_2877at 3072.310 kb on - strandat 3072.358 kb on + strand, within Dsui_2877at 3072.358 kb on + strand, within Dsui_2877at 3072.599 kb on + strand, within Dsui_2878at 3072.711 kb on + strand, within Dsui_2878at 3072.781 kb on - strand, within Dsui_2878at 3072.883 kb on - strandat 3072.897 kb on + strand, within Dsui_2878at 3073.085 kb on + strand, within Dsui_2878at 3073.228 kb on - strand, within Dsui_2878at 3073.417 kb on + strand, within Dsui_2878

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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3,070,772 - -0.5
3,070,780 + Dsui_2876 0.24 -0.1
3,070,780 + Dsui_2876 0.24 -2.3
3,070,783 + Dsui_2876 0.25 -1.5
3,070,820 + Dsui_2876 0.28 -0.6
3,070,820 + Dsui_2876 0.28 -0.4
3,070,851 + Dsui_2876 0.30 -0.9
3,070,979 - -1.5
3,071,069 + Dsui_2876 0.47 +0.2
3,071,069 + Dsui_2876 0.47 -0.5
3,071,120 - Dsui_2876 0.51 -1.1
3,071,304 + Dsui_2876 0.66 -0.2
3,071,385 - -1.5
3,071,523 + Dsui_2876 0.83 -0.5
3,071,800 - +0.5
3,071,813 - Dsui_2877 0.11 -3.0
3,071,921 - +0.5
3,071,931 - -0.5
3,072,069 - -0.5
3,072,076 - +0.5
3,072,148 + Dsui_2877 0.56 -1.1
3,072,187 - Dsui_2877 0.61 -1.8
3,072,246 + Dsui_2877 0.69 -1.5
3,072,310 - +0.5
3,072,358 + Dsui_2877 0.84 -0.1
3,072,358 + Dsui_2877 0.84 +0.9
3,072,599 + Dsui_2878 0.11 -0.6
3,072,711 + Dsui_2878 0.20 -1.8
3,072,781 - Dsui_2878 0.25 -0.5
3,072,883 - -0.5
3,072,897 + Dsui_2878 0.35 +0.7
3,073,085 + Dsui_2878 0.50 +0.8
3,073,228 - Dsui_2878 0.62 -1.1
3,073,417 + Dsui_2878 0.78 +0.2

Or see this region's nucleotide sequence