Strain Fitness in Dechlorosoma suillum PS around Dsui_2809

Experiment: ALP with Chloride 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2808 and Dsui_2809 are separated by 59 nucleotidesDsui_2809 and Dsui_2810 overlap by 4 nucleotidesDsui_2810 and Dsui_2811 are separated by 19 nucleotides Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211 _2808 Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858 _2809 Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778 _2810 Dsui_2811: Dsui_2811 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 2,984,798 to 2,985,571 _2811 Position (kb) 2983 2984Strain fitness (log2 ratio) -3 -2 -1 0 1at 2982.343 kb on + strand, within Dsui_2808at 2982.507 kb on + strand, within Dsui_2808at 2982.510 kb on - strand, within Dsui_2808at 2982.510 kb on - strand, within Dsui_2808at 2982.510 kb on - strand, within Dsui_2808at 2982.564 kb on - strand, within Dsui_2808at 2982.700 kb on + strandat 2982.826 kb on - strand, within Dsui_2808at 2983.054 kb on + strandat 2983.122 kb on + strandat 2983.741 kb on - strand, within Dsui_2809at 2983.827 kb on - strandat 2983.861 kb on - strandat 2984.498 kb on - strand, within Dsui_2810at 2984.511 kb on + strandat 2984.718 kb on - strandat 2984.734 kb on - strandat 2984.737 kb on + strandat 2984.803 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
remove
2,982,343 + Dsui_2808 0.48 +0.5
2,982,507 + Dsui_2808 0.58 +0.5
2,982,510 - Dsui_2808 0.58 +0.2
2,982,510 - Dsui_2808 0.58 -0.4
2,982,510 - Dsui_2808 0.58 -0.7
2,982,564 - Dsui_2808 0.61 +0.2
2,982,700 + +0.5
2,982,826 - Dsui_2808 0.77 -3.1
2,983,054 + +0.5
2,983,122 + +0.5
2,983,741 - Dsui_2809 0.80 -1.8
2,983,827 - -0.5
2,983,861 - -1.5
2,984,498 - Dsui_2810 0.70 +0.5
2,984,511 + +0.5
2,984,718 - +0.5
2,984,734 - -1.5
2,984,737 + +0.5
2,984,803 - +0.5

Or see this region's nucleotide sequence