Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2427 and Dsui_2428 are separated by 185 nucleotides Dsui_2428 and Dsui_2429 overlap by 4 nucleotides Dsui_2429 and Dsui_2430 are separated by 127 nucleotides Dsui_2430 and Dsui_2431 are separated by 54 nucleotides Dsui_2431 and Dsui_2432 are separated by 62 nucleotides
Dsui_2427: Dsui_2427 - molybdenum cofactor biosynthesis protein A, at 2,586,848 to 2,587,921
_2427
Dsui_2428: Dsui_2428 - cyclic nucleotide-binding protein, at 2,588,107 to 2,588,583
_2428
Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719
_2429
Dsui_2430: Dsui_2430 - tRNA-Asn, at 2,589,847 to 2,589,922
_2430
Dsui_2431: Dsui_2431 - tRNA-Asn, at 2,589,977 to 2,590,052
_2431
Dsui_2432: Dsui_2432 - hypothetical protein, at 2,590,115 to 2,591,863
_2432
Position (kb)
2588
2589
2590 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2587.600 kb on + strand at 2587.608 kb on - strand, within Dsui_2427 at 2587.652 kb on + strand, within Dsui_2427 at 2587.656 kb on - strand, within Dsui_2427 at 2587.696 kb on + strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.704 kb on - strand, within Dsui_2427 at 2587.739 kb on - strand, within Dsui_2427 at 2587.787 kb on - strand, within Dsui_2427 at 2587.857 kb on - strand at 2587.916 kb on - strand at 2588.223 kb on + strand, within Dsui_2428 at 2588.287 kb on - strand at 2588.332 kb on + strand, within Dsui_2428 at 2588.401 kb on + strand, within Dsui_2428 at 2588.540 kb on + strand at 2588.543 kb on - strand at 2588.610 kb on - strand at 2588.662 kb on + strand at 2588.667 kb on + strand at 2588.678 kb on - strand at 2588.695 kb on + strand, within Dsui_2429 at 2588.739 kb on + strand, within Dsui_2429 at 2588.964 kb on - strand at 2588.969 kb on + strand, within Dsui_2429 at 2588.984 kb on + strand at 2588.987 kb on - strand, within Dsui_2429 at 2589.034 kb on + strand, within Dsui_2429 at 2589.034 kb on - strand at 2589.062 kb on + strand at 2589.184 kb on + strand, within Dsui_2429 at 2589.184 kb on + strand, within Dsui_2429 at 2589.184 kb on + strand, within Dsui_2429 at 2589.192 kb on - strand at 2589.192 kb on - strand at 2589.244 kb on + strand at 2589.248 kb on + strand, within Dsui_2429 at 2589.252 kb on - strand at 2589.262 kb on + strand, within Dsui_2429 at 2589.270 kb on - strand, within Dsui_2429 at 2589.272 kb on + strand, within Dsui_2429 at 2589.290 kb on + strand, within Dsui_2429 at 2589.348 kb on + strand, within Dsui_2429 at 2589.371 kb on - strand, within Dsui_2429 at 2589.433 kb on - strand at 2589.513 kb on - strand at 2589.625 kb on + strand at 2589.664 kb on + strand at 2589.891 kb on - strand, within Dsui_2430 at 2589.938 kb on - strand at 2590.205 kb on + strand at 2590.205 kb on + strand at 2590.205 kb on + strand at 2590.440 kb on - strand at 2590.672 kb on - strand at 2590.706 kb on + strand, within Dsui_2432 at 2590.706 kb on + strand, within Dsui_2432 at 2590.712 kb on + strand, within Dsui_2432 at 2590.717 kb on + strand, within Dsui_2432
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 2,587,600 + +0.5 2,587,608 - Dsui_2427 0.71 -0.2 2,587,652 + Dsui_2427 0.75 -1.5 2,587,656 - Dsui_2427 0.75 -1.2 2,587,696 + Dsui_2427 0.79 -0.5 2,587,704 - Dsui_2427 0.80 -1.4 2,587,704 - Dsui_2427 0.80 -0.8 2,587,704 - Dsui_2427 0.80 -0.3 2,587,739 - Dsui_2427 0.83 +0.2 2,587,787 - Dsui_2427 0.87 +0.5 2,587,857 - -0.3 2,587,916 - -1.0 2,588,223 + Dsui_2428 0.24 -0.5 2,588,287 - -1.5 2,588,332 + Dsui_2428 0.47 -0.5 2,588,401 + Dsui_2428 0.62 +0.5 2,588,540 + -0.5 2,588,543 - -0.5 2,588,610 - -0.5 2,588,662 + -1.5 2,588,667 + +0.5 2,588,678 - +0.5 2,588,695 + Dsui_2429 0.10 -1.9 2,588,739 + Dsui_2429 0.14 +0.5 2,588,964 - +0.5 2,588,969 + Dsui_2429 0.34 -1.9 2,588,984 + -0.5 2,588,987 - Dsui_2429 0.36 +0.5 2,589,034 + Dsui_2429 0.40 -2.5 2,589,034 - +0.5 2,589,062 + +0.5 2,589,184 + Dsui_2429 0.53 -0.5 2,589,184 + Dsui_2429 0.53 -1.1 2,589,184 + Dsui_2429 0.53 -1.1 2,589,192 - -0.5 2,589,192 - -1.1 2,589,244 + +0.5 2,589,248 + Dsui_2429 0.59 -0.5 2,589,252 - +0.5 2,589,262 + Dsui_2429 0.60 -1.5 2,589,270 - Dsui_2429 0.61 -0.5 2,589,272 + Dsui_2429 0.61 -1.9 2,589,290 + Dsui_2429 0.62 -1.1 2,589,348 + Dsui_2429 0.67 -1.5 2,589,371 - Dsui_2429 0.69 -1.1 2,589,433 - -1.1 2,589,513 - -1.5 2,589,625 + +0.5 2,589,664 + -0.5 2,589,891 - Dsui_2430 0.58 +0.4 2,589,938 - +0.1 2,590,205 + -2.9 2,590,205 + +0.5 2,590,205 + -1.1 2,590,440 - +0.5 2,590,672 - -1.1 2,590,706 + Dsui_2432 0.34 -1.9 2,590,706 + Dsui_2432 0.34 -1.1 2,590,712 + Dsui_2432 0.34 +0.5 2,590,717 + Dsui_2432 0.34 -1.5
Or see this region's nucleotide sequence