Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2289 and Dsui_2290 overlap by 8 nucleotides Dsui_2290 and Dsui_2291 overlap by 4 nucleotides Dsui_2291 and Dsui_2292 are separated by 37 nucleotides
Dsui_2289: Dsui_2289 - qaraquat-inducible protein B, at 2,443,404 to 2,444,975
_2289
Dsui_2290: Dsui_2290 - putative paraquat-inducible protein A, at 2,444,968 to 2,445,633
_2290
Dsui_2291: Dsui_2291 - putative paraquat-inducible protein A, at 2,445,630 to 2,446,265
_2291
Dsui_2292: Dsui_2292 - RRM domain-containing RNA-binding protein, at 2,446,303 to 2,446,542
_2292
Position (kb)
2444
2445
2446 Strain fitness (log2 ratio)
-2
-1
0
1 at 2444.007 kb on - strand, within Dsui_2289 at 2444.055 kb on - strand, within Dsui_2289 at 2444.059 kb on - strand at 2444.122 kb on + strand, within Dsui_2289 at 2444.122 kb on + strand at 2444.233 kb on - strand, within Dsui_2289 at 2444.233 kb on - strand, within Dsui_2289 at 2444.233 kb on - strand, within Dsui_2289 at 2444.255 kb on + strand at 2444.836 kb on + strand at 2444.875 kb on - strand at 2444.914 kb on - strand at 2445.119 kb on - strand, within Dsui_2290 at 2445.148 kb on - strand, within Dsui_2290 at 2445.166 kb on - strand, within Dsui_2290 at 2445.189 kb on + strand at 2445.197 kb on - strand, within Dsui_2290 at 2445.221 kb on + strand at 2445.287 kb on - strand, within Dsui_2290 at 2445.323 kb on - strand, within Dsui_2290 at 2445.356 kb on - strand at 2445.829 kb on - strand, within Dsui_2291 at 2445.923 kb on - strand, within Dsui_2291 at 2445.975 kb on + strand at 2446.076 kb on + strand at 2446.077 kb on - strand at 2446.094 kb on + strand, within Dsui_2291 at 2446.158 kb on - strand, within Dsui_2291 at 2446.158 kb on - strand, within Dsui_2291 at 2446.158 kb on - strand at 2446.296 kb on - strand at 2446.518 kb on + strand at 2446.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 2,444,007 - Dsui_2289 0.38 +0.6 2,444,055 - Dsui_2289 0.41 -1.4 2,444,059 - -0.4 2,444,122 + Dsui_2289 0.46 -0.4 2,444,122 + -0.4 2,444,233 - Dsui_2289 0.53 +0.6 2,444,233 - Dsui_2289 0.53 -0.4 2,444,233 - Dsui_2289 0.53 +0.6 2,444,255 + -1.0 2,444,836 + +0.5 2,444,875 - +0.5 2,444,914 - +0.5 2,445,119 - Dsui_2290 0.23 -1.8 2,445,148 - Dsui_2290 0.27 +0.5 2,445,166 - Dsui_2290 0.30 -2.6 2,445,189 + +0.5 2,445,197 - Dsui_2290 0.34 +0.5 2,445,221 + +0.5 2,445,287 - Dsui_2290 0.48 -0.5 2,445,323 - Dsui_2290 0.53 -0.5 2,445,356 - +0.5 2,445,829 - Dsui_2291 0.31 +0.5 2,445,923 - Dsui_2291 0.46 -0.5 2,445,975 + +0.5 2,446,076 + -0.5 2,446,077 - +0.5 2,446,094 + Dsui_2291 0.73 -1.8 2,446,158 - Dsui_2291 0.83 -0.5 2,446,158 - Dsui_2291 0.83 -0.5 2,446,158 - -0.5 2,446,296 - -0.5 2,446,518 + -0.5 2,446,584 - -0.5
Or see this region's nucleotide sequence