Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2222 and Dsui_2223 are separated by 58 nucleotides Dsui_2223 and Dsui_2224 are separated by 4 nucleotides Dsui_2224 and Dsui_2225 are separated by 170 nucleotides
Dsui_2222: Dsui_2222 - type II secretory pathway, component PulD, at 2,362,777 to 2,363,682
_2222
Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266
_2223
Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747
_2224
Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067
_2225
Position (kb)
2363
2364
2365
2366
2367 Strain fitness (log2 ratio)
-2
-1
0
1 at 2362.774 kb on + strand at 2362.808 kb on + strand at 2362.818 kb on + strand at 2362.847 kb on - strand at 2362.851 kb on + strand at 2362.985 kb on + strand, within Dsui_2222 at 2363.048 kb on + strand, within Dsui_2222 at 2363.058 kb on + strand, within Dsui_2222 at 2363.073 kb on - strand, within Dsui_2222 at 2363.222 kb on + strand, within Dsui_2222 at 2363.222 kb on + strand, within Dsui_2222 at 2363.361 kb on + strand, within Dsui_2222 at 2363.420 kb on - strand, within Dsui_2222 at 2363.426 kb on + strand, within Dsui_2222 at 2363.473 kb on + strand, within Dsui_2222 at 2363.513 kb on + strand, within Dsui_2222 at 2363.729 kb on + strand at 2363.774 kb on + strand at 2363.837 kb on - strand at 2363.837 kb on - strand at 2363.854 kb on + strand at 2363.861 kb on + strand at 2363.915 kb on + strand at 2363.971 kb on - strand at 2363.993 kb on - strand at 2364.050 kb on - strand at 2364.264 kb on - strand at 2364.319 kb on + strand, within Dsui_2223 at 2364.351 kb on - strand at 2364.362 kb on - strand, within Dsui_2223 at 2364.415 kb on - strand, within Dsui_2223 at 2364.463 kb on + strand, within Dsui_2223 at 2364.528 kb on - strand at 2364.529 kb on + strand at 2364.558 kb on - strand at 2364.572 kb on + strand, within Dsui_2223 at 2364.597 kb on + strand, within Dsui_2223 at 2364.697 kb on + strand, within Dsui_2223 at 2364.728 kb on - strand, within Dsui_2223 at 2364.791 kb on + strand, within Dsui_2223 at 2364.807 kb on + strand, within Dsui_2223 at 2364.812 kb on + strand, within Dsui_2223 at 2364.849 kb on - strand, within Dsui_2223 at 2364.889 kb on + strand, within Dsui_2223 at 2364.975 kb on + strand, within Dsui_2223 at 2365.044 kb on + strand, within Dsui_2223 at 2365.052 kb on - strand at 2365.087 kb on + strand, within Dsui_2223 at 2365.087 kb on + strand, within Dsui_2223 at 2365.087 kb on + strand, within Dsui_2223 at 2365.213 kb on + strand, within Dsui_2223 at 2365.268 kb on + strand, within Dsui_2223 at 2365.360 kb on - strand at 2365.395 kb on + strand, within Dsui_2223 at 2365.514 kb on + strand, within Dsui_2223 at 2365.528 kb on + strand, within Dsui_2223 at 2365.598 kb on + strand, within Dsui_2223 at 2365.606 kb on - strand at 2365.617 kb on + strand, within Dsui_2223 at 2365.677 kb on + strand, within Dsui_2223 at 2365.677 kb on + strand, within Dsui_2223 at 2365.793 kb on + strand, within Dsui_2223 at 2365.814 kb on - strand at 2365.828 kb on - strand at 2365.833 kb on - strand at 2366.029 kb on + strand at 2366.176 kb on + strand at 2366.205 kb on - strand at 2366.344 kb on + strand, within Dsui_2224 at 2366.431 kb on - strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.640 kb on - strand at 2366.691 kb on - strand at 2366.741 kb on + strand at 2366.777 kb on + strand at 2366.854 kb on - strand at 2366.894 kb on - strand at 2367.117 kb on + strand at 2367.127 kb on + strand at 2367.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 2,362,774 + -0.1 2,362,808 + +0.2 2,362,818 + +0.5 2,362,847 - +0.7 2,362,851 + +0.4 2,362,985 + Dsui_2222 0.23 +0.1 2,363,048 + Dsui_2222 0.30 +0.2 2,363,058 + Dsui_2222 0.31 +0.1 2,363,073 - Dsui_2222 0.33 +0.1 2,363,222 + Dsui_2222 0.49 +0.0 2,363,222 + Dsui_2222 0.49 +0.3 2,363,361 + Dsui_2222 0.64 -0.2 2,363,420 - Dsui_2222 0.71 +0.7 2,363,426 + Dsui_2222 0.72 +0.8 2,363,473 + Dsui_2222 0.77 +0.3 2,363,513 + Dsui_2222 0.81 +0.2 2,363,729 + +0.4 2,363,774 + +0.7 2,363,837 - -0.9 2,363,837 - +0.7 2,363,854 + +0.2 2,363,861 + +0.2 2,363,915 + -0.1 2,363,971 - +0.7 2,363,993 - +0.7 2,364,050 - +0.7 2,364,264 - +0.7 2,364,319 + Dsui_2223 0.23 +0.2 2,364,351 - +0.7 2,364,362 - Dsui_2223 0.25 -1.7 2,364,415 - Dsui_2223 0.27 -2.3 2,364,463 + Dsui_2223 0.29 +0.2 2,364,528 - -0.3 2,364,529 + +1.0 2,364,558 - -0.9 2,364,572 + Dsui_2223 0.33 -0.0 2,364,597 + Dsui_2223 0.34 +0.0 2,364,697 + Dsui_2223 0.38 +0.2 2,364,728 - Dsui_2223 0.39 -0.3 2,364,791 + Dsui_2223 0.42 +0.3 2,364,807 + Dsui_2223 0.42 -0.0 2,364,812 + Dsui_2223 0.42 +0.3 2,364,849 - Dsui_2223 0.44 +0.7 2,364,889 + Dsui_2223 0.45 -0.1 2,364,975 + Dsui_2223 0.49 +0.3 2,365,044 + Dsui_2223 0.52 -0.2 2,365,052 - +0.7 2,365,087 + Dsui_2223 0.53 +0.3 2,365,087 + Dsui_2223 0.53 +0.4 2,365,087 + Dsui_2223 0.53 +0.3 2,365,213 + Dsui_2223 0.58 +0.0 2,365,268 + Dsui_2223 0.60 +0.4 2,365,360 - -0.3 2,365,395 + Dsui_2223 0.65 -0.4 2,365,514 + Dsui_2223 0.70 +0.7 2,365,528 + Dsui_2223 0.71 +0.0 2,365,598 + Dsui_2223 0.74 +0.3 2,365,606 - +0.7 2,365,617 + Dsui_2223 0.74 -0.1 2,365,677 + Dsui_2223 0.77 +0.4 2,365,677 + Dsui_2223 0.77 +1.2 2,365,793 + Dsui_2223 0.81 +0.3 2,365,814 - -0.9 2,365,828 - +0.6 2,365,833 - -0.4 2,366,029 + +0.3 2,366,176 + +0.4 2,366,205 - -0.4 2,366,344 + Dsui_2224 0.15 +0.1 2,366,431 - Dsui_2224 0.34 -0.4 2,366,632 + Dsui_2224 0.76 -0.9 2,366,632 + Dsui_2224 0.76 -1.4 2,366,640 - -0.4 2,366,691 - +0.6 2,366,741 + +0.1 2,366,777 + -1.2 2,366,854 - -0.9 2,366,894 - +0.6 2,367,117 + -0.4 2,367,127 + -0.9 2,367,138 + +0.6
Or see this region's nucleotide sequence