Strain Fitness in Dechlorosoma suillum PS around Dsui_2223

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2222 and Dsui_2223 are separated by 58 nucleotidesDsui_2223 and Dsui_2224 are separated by 4 nucleotidesDsui_2224 and Dsui_2225 are separated by 170 nucleotides Dsui_2222: Dsui_2222 - type II secretory pathway, component PulD, at 2,362,777 to 2,363,682 _2222 Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266 _2223 Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747 _2224 Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067 _2225 Position (kb) 2363 2364 2365 2366 2367Strain fitness (log2 ratio) -2 -1 0 1at 2362.774 kb on + strandat 2362.808 kb on + strandat 2362.818 kb on + strandat 2362.847 kb on - strandat 2362.851 kb on + strandat 2362.985 kb on + strand, within Dsui_2222at 2363.048 kb on + strand, within Dsui_2222at 2363.058 kb on + strand, within Dsui_2222at 2363.073 kb on - strand, within Dsui_2222at 2363.222 kb on + strand, within Dsui_2222at 2363.222 kb on + strand, within Dsui_2222at 2363.361 kb on + strand, within Dsui_2222at 2363.420 kb on - strand, within Dsui_2222at 2363.426 kb on + strand, within Dsui_2222at 2363.473 kb on + strand, within Dsui_2222at 2363.513 kb on + strand, within Dsui_2222at 2363.729 kb on + strandat 2363.774 kb on + strandat 2363.837 kb on - strandat 2363.837 kb on - strandat 2363.854 kb on + strandat 2363.861 kb on + strandat 2363.915 kb on + strandat 2363.971 kb on - strandat 2363.993 kb on - strandat 2364.050 kb on - strandat 2364.264 kb on - strandat 2364.319 kb on + strand, within Dsui_2223at 2364.351 kb on - strandat 2364.362 kb on - strand, within Dsui_2223at 2364.415 kb on - strand, within Dsui_2223at 2364.463 kb on + strand, within Dsui_2223at 2364.528 kb on - strandat 2364.529 kb on + strandat 2364.558 kb on - strandat 2364.572 kb on + strand, within Dsui_2223at 2364.597 kb on + strand, within Dsui_2223at 2364.697 kb on + strand, within Dsui_2223at 2364.728 kb on - strand, within Dsui_2223at 2364.791 kb on + strand, within Dsui_2223at 2364.807 kb on + strand, within Dsui_2223at 2364.812 kb on + strand, within Dsui_2223at 2364.849 kb on - strand, within Dsui_2223at 2364.889 kb on + strand, within Dsui_2223at 2364.975 kb on + strand, within Dsui_2223at 2365.044 kb on + strand, within Dsui_2223at 2365.052 kb on - strandat 2365.087 kb on + strand, within Dsui_2223at 2365.087 kb on + strand, within Dsui_2223at 2365.087 kb on + strand, within Dsui_2223at 2365.213 kb on + strand, within Dsui_2223at 2365.268 kb on + strand, within Dsui_2223at 2365.360 kb on - strandat 2365.395 kb on + strand, within Dsui_2223at 2365.514 kb on + strand, within Dsui_2223at 2365.528 kb on + strand, within Dsui_2223at 2365.598 kb on + strand, within Dsui_2223at 2365.606 kb on - strandat 2365.617 kb on + strand, within Dsui_2223at 2365.677 kb on + strand, within Dsui_2223at 2365.677 kb on + strand, within Dsui_2223at 2365.793 kb on + strand, within Dsui_2223at 2365.814 kb on - strandat 2365.828 kb on - strandat 2365.833 kb on - strandat 2366.029 kb on + strandat 2366.176 kb on + strandat 2366.205 kb on - strandat 2366.344 kb on + strand, within Dsui_2224at 2366.431 kb on - strand, within Dsui_2224at 2366.632 kb on + strand, within Dsui_2224at 2366.632 kb on + strand, within Dsui_2224at 2366.640 kb on - strandat 2366.691 kb on - strandat 2366.741 kb on + strandat 2366.777 kb on + strandat 2366.854 kb on - strandat 2366.894 kb on - strandat 2367.117 kb on + strandat 2367.127 kb on + strandat 2367.138 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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2,362,774 + -0.1
2,362,808 + +0.2
2,362,818 + +0.5
2,362,847 - +0.7
2,362,851 + +0.4
2,362,985 + Dsui_2222 0.23 +0.1
2,363,048 + Dsui_2222 0.30 +0.2
2,363,058 + Dsui_2222 0.31 +0.1
2,363,073 - Dsui_2222 0.33 +0.1
2,363,222 + Dsui_2222 0.49 +0.0
2,363,222 + Dsui_2222 0.49 +0.3
2,363,361 + Dsui_2222 0.64 -0.2
2,363,420 - Dsui_2222 0.71 +0.7
2,363,426 + Dsui_2222 0.72 +0.8
2,363,473 + Dsui_2222 0.77 +0.3
2,363,513 + Dsui_2222 0.81 +0.2
2,363,729 + +0.4
2,363,774 + +0.7
2,363,837 - -0.9
2,363,837 - +0.7
2,363,854 + +0.2
2,363,861 + +0.2
2,363,915 + -0.1
2,363,971 - +0.7
2,363,993 - +0.7
2,364,050 - +0.7
2,364,264 - +0.7
2,364,319 + Dsui_2223 0.23 +0.2
2,364,351 - +0.7
2,364,362 - Dsui_2223 0.25 -1.7
2,364,415 - Dsui_2223 0.27 -2.3
2,364,463 + Dsui_2223 0.29 +0.2
2,364,528 - -0.3
2,364,529 + +1.0
2,364,558 - -0.9
2,364,572 + Dsui_2223 0.33 -0.0
2,364,597 + Dsui_2223 0.34 +0.0
2,364,697 + Dsui_2223 0.38 +0.2
2,364,728 - Dsui_2223 0.39 -0.3
2,364,791 + Dsui_2223 0.42 +0.3
2,364,807 + Dsui_2223 0.42 -0.0
2,364,812 + Dsui_2223 0.42 +0.3
2,364,849 - Dsui_2223 0.44 +0.7
2,364,889 + Dsui_2223 0.45 -0.1
2,364,975 + Dsui_2223 0.49 +0.3
2,365,044 + Dsui_2223 0.52 -0.2
2,365,052 - +0.7
2,365,087 + Dsui_2223 0.53 +0.3
2,365,087 + Dsui_2223 0.53 +0.4
2,365,087 + Dsui_2223 0.53 +0.3
2,365,213 + Dsui_2223 0.58 +0.0
2,365,268 + Dsui_2223 0.60 +0.4
2,365,360 - -0.3
2,365,395 + Dsui_2223 0.65 -0.4
2,365,514 + Dsui_2223 0.70 +0.7
2,365,528 + Dsui_2223 0.71 +0.0
2,365,598 + Dsui_2223 0.74 +0.3
2,365,606 - +0.7
2,365,617 + Dsui_2223 0.74 -0.1
2,365,677 + Dsui_2223 0.77 +0.4
2,365,677 + Dsui_2223 0.77 +1.2
2,365,793 + Dsui_2223 0.81 +0.3
2,365,814 - -0.9
2,365,828 - +0.6
2,365,833 - -0.4
2,366,029 + +0.3
2,366,176 + +0.4
2,366,205 - -0.4
2,366,344 + Dsui_2224 0.15 +0.1
2,366,431 - Dsui_2224 0.34 -0.4
2,366,632 + Dsui_2224 0.76 -0.9
2,366,632 + Dsui_2224 0.76 -1.4
2,366,640 - -0.4
2,366,691 - +0.6
2,366,741 + +0.1
2,366,777 + -1.2
2,366,854 - -0.9
2,366,894 - +0.6
2,367,117 + -0.4
2,367,127 + -0.9
2,367,138 + +0.6

Or see this region's nucleotide sequence